Strain Fitness in Pseudomonas simiae WCS417 around PS417_03010

Experiment: Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPS417_03005 and PS417_03010 are separated by 131 nucleotidesPS417_03010 and PS417_03015 are separated by 178 nucleotides PS417_03005: PS417_03005 - arginine decarboxylase, at 686,790 to 688,703 _03005 PS417_03010: PS417_03010 - XRE family transcriptional regulator, at 688,835 to 690,178 _03010 PS417_03015: PS417_03015 - hypothetical protein, at 690,357 to 695,255 _03015 Position (kb) 688 689 690 691Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 688.008 kb on + strand, within PS417_03005at 688.008 kb on + strand, within PS417_03005at 688.009 kb on - strand, within PS417_03005at 688.083 kb on + strand, within PS417_03005at 688.083 kb on + strand, within PS417_03005at 688.084 kb on - strand, within PS417_03005at 688.110 kb on - strand, within PS417_03005at 688.182 kb on + strand, within PS417_03005at 688.182 kb on + strand, within PS417_03005at 688.182 kb on + strand, within PS417_03005at 688.183 kb on - strand, within PS417_03005at 688.339 kb on - strand, within PS417_03005at 688.401 kb on + strand, within PS417_03005at 688.401 kb on + strand, within PS417_03005at 688.401 kb on + strand, within PS417_03005at 688.401 kb on + strand, within PS417_03005at 688.431 kb on + strand, within PS417_03005at 688.451 kb on + strand, within PS417_03005at 688.491 kb on + strand, within PS417_03005at 688.574 kb on - strandat 688.702 kb on - strandat 688.702 kb on - strandat 688.829 kb on - strandat 688.840 kb on + strandat 688.840 kb on + strandat 688.841 kb on - strandat 688.843 kb on + strandat 688.843 kb on + strandat 688.844 kb on - strandat 688.847 kb on + strandat 688.868 kb on + strandat 689.059 kb on - strand, within PS417_03010at 689.095 kb on - strand, within PS417_03010at 689.095 kb on - strand, within PS417_03010at 689.103 kb on + strand, within PS417_03010at 689.104 kb on - strand, within PS417_03010at 689.104 kb on - strand, within PS417_03010at 689.152 kb on + strand, within PS417_03010at 689.153 kb on - strand, within PS417_03010at 689.330 kb on + strand, within PS417_03010at 689.330 kb on + strand, within PS417_03010at 689.330 kb on + strand, within PS417_03010at 689.724 kb on + strand, within PS417_03010at 689.725 kb on - strand, within PS417_03010at 689.855 kb on + strand, within PS417_03010at 689.995 kb on + strand, within PS417_03010at 689.996 kb on - strand, within PS417_03010at 689.997 kb on + strand, within PS417_03010at 689.997 kb on + strand, within PS417_03010at 689.997 kb on + strand, within PS417_03010at 689.998 kb on - strand, within PS417_03010at 690.167 kb on + strandat 690.167 kb on + strandat 690.168 kb on - strandat 690.316 kb on + strandat 690.316 kb on + strandat 690.317 kb on - strandat 690.317 kb on - strandat 690.317 kb on - strandat 690.317 kb on - strandat 690.317 kb on - strandat 690.317 kb on - strandat 690.318 kb on + strandat 690.318 kb on + strandat 690.319 kb on - strandat 690.319 kb on - strandat 690.319 kb on - strandat 690.319 kb on - strandat 690.320 kb on + strandat 690.320 kb on + strandat 690.320 kb on + strandat 690.320 kb on + strandat 690.320 kb on + strandat 690.320 kb on + strandat 690.321 kb on - strandat 690.321 kb on - strandat 690.362 kb on + strandat 690.362 kb on + strandat 690.363 kb on - strandat 690.553 kb on + strandat 690.553 kb on + strandat 690.554 kb on - strandat 690.996 kb on + strand, within PS417_03015at 690.996 kb on + strand, within PS417_03015at 691.161 kb on + strand, within PS417_03015at 691.162 kb on - strand, within PS417_03015at 691.162 kb on - strand, within PS417_03015

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
remove
688,008 + PS417_03005 0.64 +1.8
688,008 + PS417_03005 0.64 -0.5
688,009 - PS417_03005 0.64 +1.1
688,083 + PS417_03005 0.68 +0.5
688,083 + PS417_03005 0.68 +2.1
688,084 - PS417_03005 0.68 -0.8
688,110 - PS417_03005 0.69 +0.8
688,182 + PS417_03005 0.73 -0.1
688,182 + PS417_03005 0.73 +0.0
688,182 + PS417_03005 0.73 -1.3
688,183 - PS417_03005 0.73 +0.3
688,339 - PS417_03005 0.81 -0.1
688,401 + PS417_03005 0.84 +0.0
688,401 + PS417_03005 0.84 -1.0
688,401 + PS417_03005 0.84 -1.9
688,401 + PS417_03005 0.84 +0.5
688,431 + PS417_03005 0.86 +2.2
688,451 + PS417_03005 0.87 -1.2
688,491 + PS417_03005 0.89 +3.9
688,574 - -0.4
688,702 - +0.2
688,702 - -1.1
688,829 - -2.0
688,840 + +0.6
688,840 + +0.8
688,841 - +2.3
688,843 + -0.5
688,843 + +1.0
688,844 - -1.3
688,847 + +0.8
688,868 + -1.2
689,059 - PS417_03010 0.17 -0.1
689,095 - PS417_03010 0.19 +0.6
689,095 - PS417_03010 0.19 +0.1
689,103 + PS417_03010 0.20 -0.0
689,104 - PS417_03010 0.20 -0.2
689,104 - PS417_03010 0.20 +0.1
689,152 + PS417_03010 0.24 +0.4
689,153 - PS417_03010 0.24 -1.1
689,330 + PS417_03010 0.37 -0.2
689,330 + PS417_03010 0.37 -0.0
689,330 + PS417_03010 0.37 +1.1
689,724 + PS417_03010 0.66 -0.9
689,725 - PS417_03010 0.66 +0.9
689,855 + PS417_03010 0.76 -2.1
689,995 + PS417_03010 0.86 +2.1
689,996 - PS417_03010 0.86 +0.5
689,997 + PS417_03010 0.86 -0.5
689,997 + PS417_03010 0.86 -0.3
689,997 + PS417_03010 0.86 -0.3
689,998 - PS417_03010 0.87 -0.1
690,167 + -0.3
690,167 + -0.5
690,168 - -0.2
690,316 + -0.1
690,316 + +0.4
690,317 - +0.7
690,317 - -0.1
690,317 - +0.8
690,317 - +2.1
690,317 - +3.4
690,317 - +0.2
690,318 + +1.8
690,318 + +0.5
690,319 - +0.7
690,319 - -1.1
690,319 - +2.2
690,319 - +0.1
690,320 + +0.5
690,320 + -1.9
690,320 + -0.1
690,320 + -0.6
690,320 + -0.7
690,320 + -0.5
690,321 - +0.1
690,321 - +1.3
690,362 + -0.5
690,362 + -0.5
690,363 - +3.1
690,553 + -0.3
690,553 + +1.8
690,554 - -0.4
690,996 + PS417_03015 0.13 -0.1
690,996 + PS417_03015 0.13 -0.5
691,161 + PS417_03015 0.16 +0.4
691,162 - PS417_03015 0.16 -0.2
691,162 - PS417_03015 0.16 +0.4

Or see this region's nucleotide sequence