Experiment: Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_26360 and PS417_26365 are separated by 36 nucleotides PS417_26365 and PS417_26370 are separated by 82 nucleotides
PS417_26360: PS417_26360 - MFS transporter, at 5,700,041 to 5,700,889
_26360
PS417_26365: PS417_26365 - EmrB/QacA subfamily drug resistance transporter, at 5,700,926 to 5,702,353
_26365
PS417_26370: PS417_26370 - RNA helicase, at 5,702,436 to 5,703,821
_26370
Position (kb) 5700
5701
5702
5703 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 5699.961 kb on + strand at 5699.962 kb on - strand at 5699.962 kb on - strand at 5699.963 kb on + strand at 5699.964 kb on - strand at 5699.995 kb on + strand at 5699.995 kb on + strand at 5699.995 kb on + strand at 5699.995 kb on + strand at 5699.996 kb on - strand at 5699.996 kb on - strand at 5699.996 kb on - strand at 5699.998 kb on + strand at 5699.998 kb on + strand at 5699.998 kb on + strand at 5699.998 kb on + strand at 5699.999 kb on - strand at 5699.999 kb on - strand at 5699.999 kb on - strand at 5700.083 kb on + strand at 5700.083 kb on + strand at 5700.084 kb on - strand at 5700.185 kb on - strand, within PS417_26360 at 5700.185 kb on - strand, within PS417_26360 at 5700.358 kb on + strand, within PS417_26360 at 5700.359 kb on - strand, within PS417_26360 at 5700.455 kb on + strand, within PS417_26360 at 5700.455 kb on + strand, within PS417_26360 at 5700.536 kb on + strand, within PS417_26360 at 5700.536 kb on + strand, within PS417_26360 at 5700.536 kb on + strand, within PS417_26360 at 5700.537 kb on - strand, within PS417_26360 at 5700.537 kb on - strand, within PS417_26360 at 5700.537 kb on - strand, within PS417_26360 at 5700.653 kb on + strand, within PS417_26360 at 5700.717 kb on - strand, within PS417_26360 at 5700.753 kb on - strand, within PS417_26360 at 5700.753 kb on - strand, within PS417_26360 at 5700.753 kb on - strand, within PS417_26360 at 5700.753 kb on - strand, within PS417_26360 at 5700.753 kb on - strand, within PS417_26360 at 5700.901 kb on + strand at 5700.901 kb on + strand at 5700.902 kb on - strand at 5701.098 kb on - strand, within PS417_26365 at 5701.416 kb on - strand, within PS417_26365 at 5702.008 kb on - strand, within PS417_26365 at 5702.015 kb on - strand, within PS417_26365 at 5702.399 kb on + strand at 5702.400 kb on - strand at 5702.441 kb on + strand at 5702.459 kb on + strand at 5702.463 kb on - strand at 5702.511 kb on + strand at 5702.650 kb on - strand, within PS417_26370 at 5702.841 kb on - strand, within PS417_26370 at 5702.934 kb on + strand, within PS417_26370 at 5703.148 kb on + strand, within PS417_26370 at 5703.149 kb on - strand, within PS417_26370
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 5,699,961 + -0.2 5,699,962 - +0.0 5,699,962 - -0.2 5,699,963 + +5.4 5,699,964 - +1.6 5,699,995 + -0.1 5,699,995 + -1.0 5,699,995 + +1.3 5,699,995 + +2.8 5,699,996 - -0.6 5,699,996 - -0.6 5,699,996 - -1.2 5,699,998 + +2.3 5,699,998 + +2.0 5,699,998 + -0.8 5,699,998 + -0.4 5,699,999 - +0.1 5,699,999 - +0.0 5,699,999 - +0.1 5,700,083 + -2.1 5,700,083 + +0.3 5,700,084 - +0.7 5,700,185 - PS417_26360 0.17 +1.4 5,700,185 - PS417_26360 0.17 -0.9 5,700,358 + PS417_26360 0.37 +0.5 5,700,359 - PS417_26360 0.37 +0.4 5,700,455 + PS417_26360 0.49 +1.2 5,700,455 + PS417_26360 0.49 +2.7 5,700,536 + PS417_26360 0.58 -0.7 5,700,536 + PS417_26360 0.58 +0.8 5,700,536 + PS417_26360 0.58 +0.6 5,700,537 - PS417_26360 0.58 -0.7 5,700,537 - PS417_26360 0.58 -0.6 5,700,537 - PS417_26360 0.58 -1.0 5,700,653 + PS417_26360 0.72 +0.4 5,700,717 - PS417_26360 0.80 +0.1 5,700,753 - PS417_26360 0.84 -0.5 5,700,753 - PS417_26360 0.84 +0.6 5,700,753 - PS417_26360 0.84 -1.2 5,700,753 - PS417_26360 0.84 +2.4 5,700,753 - PS417_26360 0.84 -0.7 5,700,901 + +1.7 5,700,901 + +0.1 5,700,902 - +1.1 5,701,098 - PS417_26365 0.12 +0.5 5,701,416 - PS417_26365 0.34 -1.0 5,702,008 - PS417_26365 0.76 +1.8 5,702,015 - PS417_26365 0.76 -0.0 5,702,399 + +1.1 5,702,400 - +0.5 5,702,441 + +0.6 5,702,459 + -1.9 5,702,463 - -1.2 5,702,511 + +2.4 5,702,650 - PS417_26370 0.15 -2.0 5,702,841 - PS417_26370 0.29 +0.5 5,702,934 + PS417_26370 0.36 -1.0 5,703,148 + PS417_26370 0.51 -1.2 5,703,149 - PS417_26370 0.51 -0.1
Or see this region's nucleotide sequence