Experiment: Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_23910 and PS417_23915 overlap by 4 nucleotides PS417_23915 and PS417_23920 are separated by 224 nucleotides
PS417_23910: PS417_23910 - 3-methyl-2-oxobutanoate hydroxymethyltransferase, at 5,174,543 to 5,175,343
_23910
PS417_23915: PS417_23915 - pantoate--beta-alanine ligase, at 5,175,340 to 5,176,191
_23915
PS417_23920: PS417_23920 - glucose-6-phosphate isomerase, at 5,176,416 to 5,178,080
_23920
Position (kb) 5175
5176
5177 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 5174.398 kb on + strand at 5174.398 kb on + strand at 5174.399 kb on - strand at 5174.400 kb on + strand at 5174.450 kb on + strand at 5174.450 kb on + strand at 5174.450 kb on + strand at 5174.451 kb on - strand at 5174.451 kb on - strand at 5174.451 kb on - strand at 5174.452 kb on + strand at 5174.453 kb on - strand at 5174.453 kb on - strand at 5174.453 kb on - strand at 5174.453 kb on - strand at 5174.453 kb on - strand at 5174.481 kb on + strand at 5174.483 kb on + strand at 5174.997 kb on + strand, within PS417_23910 at 5174.997 kb on + strand, within PS417_23910 at 5174.997 kb on + strand, within PS417_23910 at 5174.997 kb on + strand, within PS417_23910 at 5174.998 kb on - strand, within PS417_23910 at 5174.998 kb on - strand, within PS417_23910 at 5174.998 kb on - strand, within PS417_23910 at 5174.998 kb on - strand, within PS417_23910 at 5175.115 kb on + strand, within PS417_23910 at 5175.183 kb on + strand, within PS417_23910 at 5175.284 kb on + strand at 5175.550 kb on + strand, within PS417_23915 at 5175.634 kb on + strand, within PS417_23915 at 5175.797 kb on - strand, within PS417_23915 at 5175.872 kb on + strand, within PS417_23915 at 5176.223 kb on + strand at 5176.276 kb on + strand at 5176.276 kb on + strand at 5176.288 kb on - strand at 5176.288 kb on - strand at 5176.298 kb on + strand at 5176.368 kb on + strand at 5176.379 kb on + strand at 5176.379 kb on + strand at 5176.397 kb on + strand at 5176.939 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 5,174,398 + +0.3 5,174,398 + -1.7 5,174,399 - -0.9 5,174,400 + -1.4 5,174,450 + -2.1 5,174,450 + -0.4 5,174,450 + +0.1 5,174,451 - +1.1 5,174,451 - -2.3 5,174,451 - -2.6 5,174,452 + -0.0 5,174,453 - -0.4 5,174,453 - -2.1 5,174,453 - +0.1 5,174,453 - -1.5 5,174,453 - -1.5 5,174,481 + -1.2 5,174,483 + -0.6 5,174,997 + PS417_23910 0.57 -1.9 5,174,997 + PS417_23910 0.57 -2.4 5,174,997 + PS417_23910 0.57 -4.3 5,174,997 + PS417_23910 0.57 -5.4 5,174,998 - PS417_23910 0.57 -1.9 5,174,998 - PS417_23910 0.57 -4.9 5,174,998 - PS417_23910 0.57 -1.7 5,174,998 - PS417_23910 0.57 -2.4 5,175,115 + PS417_23910 0.71 -1.9 5,175,183 + PS417_23910 0.80 +0.1 5,175,284 + -1.9 5,175,550 + PS417_23915 0.25 -3.3 5,175,634 + PS417_23915 0.35 -1.5 5,175,797 - PS417_23915 0.54 -5.4 5,175,872 + PS417_23915 0.62 -2.3 5,176,223 + +1.6 5,176,276 + +0.5 5,176,276 + +1.8 5,176,288 - -0.9 5,176,288 - +0.4 5,176,298 + +0.8 5,176,368 + +0.1 5,176,379 + -0.0 5,176,379 + +0.8 5,176,397 + -0.5 5,176,939 - -1.3
Or see this region's nucleotide sequence