Strain Fitness in Pseudomonas simiae WCS417 around PS417_02210

Experiment: Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_02200 and PS417_02205 are separated by 138 nucleotidesPS417_02205 and PS417_02210 are separated by 72 nucleotidesPS417_02210 and PS417_02215 are separated by 315 nucleotides PS417_02200: PS417_02200 - lactate dehydrogenase, at 495,965 to 496,801 _02200 PS417_02205: PS417_02205 - peptide methionine sulfoxide reductase, at 496,940 to 497,587 _02205 PS417_02210: PS417_02210 - diguanylate cyclase, at 497,660 to 500,353 _02210 PS417_02215: PS417_02215 - dihydrolipoamide acetyltransferase, at 500,669 to 502,315 _02215 Position (kb) 497 498 499 500 501Strain fitness (log2 ratio) -2 -1 0 1 2at 496.810 kb on + strandat 496.811 kb on - strandat 496.863 kb on - strandat 496.863 kb on - strandat 496.863 kb on - strandat 496.863 kb on - strandat 496.870 kb on + strandat 496.873 kb on + strandat 496.874 kb on - strandat 496.941 kb on + strandat 496.981 kb on - strandat 497.005 kb on - strand, within PS417_02205at 497.005 kb on - strand, within PS417_02205at 497.016 kb on + strand, within PS417_02205at 497.031 kb on + strand, within PS417_02205at 497.031 kb on + strand, within PS417_02205at 497.101 kb on - strand, within PS417_02205at 497.151 kb on + strand, within PS417_02205at 497.152 kb on - strand, within PS417_02205at 497.166 kb on + strand, within PS417_02205at 497.269 kb on - strand, within PS417_02205at 497.269 kb on - strand, within PS417_02205at 497.269 kb on - strand, within PS417_02205at 497.269 kb on - strand, within PS417_02205at 497.322 kb on + strand, within PS417_02205at 497.323 kb on - strand, within PS417_02205at 497.822 kb on - strandat 497.941 kb on - strand, within PS417_02210at 497.941 kb on - strand, within PS417_02210at 499.038 kb on + strand, within PS417_02210at 499.038 kb on + strand, within PS417_02210at 499.252 kb on - strand, within PS417_02210at 499.455 kb on - strand, within PS417_02210at 499.983 kb on + strand, within PS417_02210at 500.014 kb on + strand, within PS417_02210at 500.015 kb on - strand, within PS417_02210at 500.016 kb on + strand, within PS417_02210at 500.016 kb on + strand, within PS417_02210at 500.017 kb on - strand, within PS417_02210at 500.161 kb on - strandat 500.257 kb on + strandat 500.258 kb on - strandat 500.472 kb on + strandat 500.472 kb on + strandat 500.472 kb on + strandat 500.473 kb on - strandat 500.474 kb on + strandat 500.475 kb on - strandat 500.475 kb on - strandat 500.528 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
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496,810 + -0.1
496,811 - -0.8
496,863 - -0.7
496,863 - -1.1
496,863 - -1.7
496,863 - -0.7
496,870 + -0.8
496,873 + -0.3
496,874 - -2.1
496,941 + +1.9
496,981 - +0.6
497,005 - PS417_02205 0.10 -0.5
497,005 - PS417_02205 0.10 -0.0
497,016 + PS417_02205 0.12 -0.4
497,031 + PS417_02205 0.14 +0.0
497,031 + PS417_02205 0.14 -0.3
497,101 - PS417_02205 0.25 -1.8
497,151 + PS417_02205 0.33 -0.5
497,152 - PS417_02205 0.33 +1.1
497,166 + PS417_02205 0.35 +0.7
497,269 - PS417_02205 0.51 +0.2
497,269 - PS417_02205 0.51 -0.4
497,269 - PS417_02205 0.51 -0.1
497,269 - PS417_02205 0.51 -0.3
497,322 + PS417_02205 0.59 -0.1
497,323 - PS417_02205 0.59 -0.5
497,822 - +0.1
497,941 - PS417_02210 0.10 +0.8
497,941 - PS417_02210 0.10 -0.5
499,038 + PS417_02210 0.51 +0.9
499,038 + PS417_02210 0.51 +1.7
499,252 - PS417_02210 0.59 +1.1
499,455 - PS417_02210 0.67 +1.0
499,983 + PS417_02210 0.86 +2.4
500,014 + PS417_02210 0.87 +0.4
500,015 - PS417_02210 0.87 +1.0
500,016 + PS417_02210 0.87 -0.0
500,016 + PS417_02210 0.87 +1.0
500,017 - PS417_02210 0.87 +0.3
500,161 - +0.5
500,257 + +0.3
500,258 - +0.4
500,472 + -1.5
500,472 + -0.8
500,472 + -0.9
500,473 - -0.7
500,474 + +0.9
500,475 - +1.1
500,475 - +0.3
500,528 + -0.1

Or see this region's nucleotide sequence