Experiment: Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_19495 and PS417_19500 are separated by 125 nucleotides PS417_19500 and PS417_19505 are separated by 82 nucleotides PS417_19505 and PS417_19510 are separated by 141 nucleotides
PS417_19495: PS417_19495 - N-acyl-L-amino acid amidohydrolase, at 4,226,878 to 4,228,224
_19495
PS417_19500: PS417_19500 - antibiotic synthesis protein MbtH, at 4,228,350 to 4,228,574
_19500
PS417_19505: PS417_19505 - 2,4-diaminobutyrate 4-aminotransferase, at 4,228,657 to 4,230,051
_19505
PS417_19510: PS417_19510 - N-acetylmuramoyl-L-alanine amidase, at 4,230,193 to 4,230,966
_19510
Position (kb) 4228
4229
4230
4231 Strain fitness (log2 ratio) -1
0
1
2 at 4227.769 kb on + strand, within PS417_19495 at 4227.855 kb on - strand, within PS417_19495 at 4227.855 kb on - strand, within PS417_19495 at 4228.198 kb on + strand at 4228.199 kb on - strand at 4228.426 kb on + strand, within PS417_19500 at 4228.427 kb on - strand, within PS417_19500 at 4228.510 kb on + strand, within PS417_19500 at 4228.563 kb on + strand at 4228.564 kb on - strand at 4228.625 kb on + strand at 4228.625 kb on + strand at 4228.626 kb on - strand at 4228.626 kb on - strand at 4229.405 kb on + strand, within PS417_19505 at 4229.785 kb on + strand, within PS417_19505 at 4229.999 kb on + strand at 4230.169 kb on + strand at 4230.170 kb on - strand at 4230.413 kb on + strand, within PS417_19510 at 4230.614 kb on + strand, within PS417_19510 at 4230.615 kb on - strand, within PS417_19510 at 4230.615 kb on - strand, within PS417_19510 at 4230.631 kb on + strand, within PS417_19510 at 4230.632 kb on - strand, within PS417_19510 at 4230.821 kb on + strand, within PS417_19510 at 4230.822 kb on - strand, within PS417_19510 at 4230.822 kb on - strand, within PS417_19510 at 4230.884 kb on + strand, within PS417_19510
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 4,227,769 + PS417_19495 0.66 -0.6 4,227,855 - PS417_19495 0.73 -0.8 4,227,855 - PS417_19495 0.73 +0.3 4,228,198 + -0.3 4,228,199 - +0.4 4,228,426 + PS417_19500 0.34 -0.4 4,228,427 - PS417_19500 0.34 -0.2 4,228,510 + PS417_19500 0.71 +0.1 4,228,563 + +0.3 4,228,564 - -1.6 4,228,625 + -0.4 4,228,625 + +0.3 4,228,626 - +0.0 4,228,626 - -0.3 4,229,405 + PS417_19505 0.54 +2.6 4,229,785 + PS417_19505 0.81 +2.1 4,229,999 + +0.9 4,230,169 + +1.2 4,230,170 - +0.0 4,230,413 + PS417_19510 0.28 +2.1 4,230,614 + PS417_19510 0.54 -0.4 4,230,615 - PS417_19510 0.55 +0.0 4,230,615 - PS417_19510 0.55 -1.2 4,230,631 + PS417_19510 0.57 +0.2 4,230,632 - PS417_19510 0.57 +0.7 4,230,821 + PS417_19510 0.81 +0.0 4,230,822 - PS417_19510 0.81 +1.0 4,230,822 - PS417_19510 0.81 -0.7 4,230,884 + PS417_19510 0.89 +0.7
Or see this region's nucleotide sequence