Strain Fitness in Pseudomonas simiae WCS417 around PS417_01675

Experiment: Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_01665 and PS417_01670 are separated by 206 nucleotidesPS417_01670 and PS417_01675 are separated by 238 nucleotidesPS417_01675 and PS417_01680 are separated by 200 nucleotides PS417_01665: PS417_01665 - GTP-binding protein TypA, at 365,500 to 367,320 _01665 PS417_01670: PS417_01670 - Fe-S-oxidoreductase, at 367,527 to 367,961 _01670 PS417_01675: PS417_01675 - maltodextrin phosphorylase, at 368,200 to 370,650 _01675 PS417_01680: PS417_01680 - membrane protein, at 370,851 to 373,922 _01680 Position (kb) 368 369 370 371Strain fitness (log2 ratio) -2 -1 0 1 2at 367.323 kb on + strandat 367.536 kb on - strandat 367.582 kb on + strand, within PS417_01670at 367.652 kb on + strand, within PS417_01670at 367.652 kb on + strand, within PS417_01670at 367.653 kb on - strand, within PS417_01670at 367.653 kb on - strand, within PS417_01670at 367.653 kb on - strand, within PS417_01670at 367.671 kb on - strand, within PS417_01670at 367.817 kb on + strand, within PS417_01670at 367.818 kb on - strand, within PS417_01670at 367.818 kb on - strand, within PS417_01670at 367.892 kb on + strand, within PS417_01670at 367.892 kb on + strand, within PS417_01670at 367.893 kb on - strand, within PS417_01670at 367.904 kb on - strand, within PS417_01670at 368.062 kb on - strandat 368.104 kb on + strandat 368.105 kb on - strandat 368.138 kb on + strandat 368.158 kb on - strandat 368.164 kb on + strandat 368.165 kb on - strandat 368.177 kb on + strandat 368.178 kb on - strandat 368.178 kb on - strandat 368.178 kb on - strandat 368.268 kb on + strandat 368.268 kb on + strandat 368.386 kb on + strandat 368.410 kb on + strandat 368.411 kb on - strandat 368.450 kb on - strand, within PS417_01675at 368.854 kb on + strand, within PS417_01675at 369.067 kb on + strand, within PS417_01675at 369.068 kb on - strand, within PS417_01675at 369.364 kb on + strand, within PS417_01675at 369.365 kb on - strand, within PS417_01675at 369.365 kb on - strand, within PS417_01675at 369.426 kb on - strand, within PS417_01675at 369.612 kb on + strand, within PS417_01675at 369.613 kb on - strand, within PS417_01675at 369.632 kb on - strand, within PS417_01675at 369.865 kb on - strand, within PS417_01675at 369.875 kb on - strand, within PS417_01675at 370.099 kb on + strand, within PS417_01675at 370.284 kb on + strand, within PS417_01675at 370.668 kb on - strandat 370.668 kb on - strandat 370.729 kb on + strandat 370.804 kb on + strandat 370.804 kb on + strandat 370.804 kb on + strandat 370.805 kb on - strandat 370.805 kb on - strandat 370.807 kb on + strandat 370.807 kb on + strandat 370.808 kb on - strandat 370.808 kb on - strandat 370.808 kb on - strandat 370.838 kb on - strandat 371.484 kb on - strand, within PS417_01680at 371.526 kb on + strandat 371.527 kb on - strand, within PS417_01680

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
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367,323 + -1.5
367,536 - +1.4
367,582 + PS417_01670 0.13 -0.8
367,652 + PS417_01670 0.29 -0.0
367,652 + PS417_01670 0.29 -1.4
367,653 - PS417_01670 0.29 -0.7
367,653 - PS417_01670 0.29 -1.0
367,653 - PS417_01670 0.29 -0.1
367,671 - PS417_01670 0.33 -0.5
367,817 + PS417_01670 0.67 +1.1
367,818 - PS417_01670 0.67 +0.6
367,818 - PS417_01670 0.67 -0.8
367,892 + PS417_01670 0.84 +1.0
367,892 + PS417_01670 0.84 -0.4
367,893 - PS417_01670 0.84 +0.3
367,904 - PS417_01670 0.87 -1.8
368,062 - -1.3
368,104 + +0.1
368,105 - +0.5
368,138 + +1.9
368,158 - +0.3
368,164 + -0.6
368,165 - -0.5
368,177 + +0.3
368,178 - +0.5
368,178 - +0.1
368,178 - +0.0
368,268 + -2.3
368,268 + +0.4
368,386 + -1.1
368,410 + +0.5
368,411 - -0.7
368,450 - PS417_01675 0.10 -0.7
368,854 + PS417_01675 0.27 -1.0
369,067 + PS417_01675 0.35 -0.0
369,068 - PS417_01675 0.35 -1.6
369,364 + PS417_01675 0.47 -0.2
369,365 - PS417_01675 0.48 -1.0
369,365 - PS417_01675 0.48 -2.1
369,426 - PS417_01675 0.50 -0.5
369,612 + PS417_01675 0.58 -0.7
369,613 - PS417_01675 0.58 +0.5
369,632 - PS417_01675 0.58 -0.5
369,865 - PS417_01675 0.68 -1.0
369,875 - PS417_01675 0.68 -0.2
370,099 + PS417_01675 0.77 +0.0
370,284 + PS417_01675 0.85 -0.5
370,668 - -1.7
370,668 - -2.5
370,729 + -0.7
370,804 + +0.6
370,804 + +1.0
370,804 + -0.9
370,805 - -1.3
370,805 - -1.3
370,807 + +0.4
370,807 + -0.2
370,808 - -0.1
370,808 - +0.8
370,808 - +0.6
370,838 - +1.0
371,484 - PS417_01680 0.21 +0.0
371,526 + -1.0
371,527 - PS417_01680 0.22 -0.4

Or see this region's nucleotide sequence