Experiment: Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_00945 and PS417_00950 are separated by 70 nucleotides PS417_00950 and PS417_00955 are separated by 83 nucleotides PS417_00955 and PS417_00960 are separated by 37 nucleotides PS417_00960 and PS417_00965 are separated by 127 nucleotides
PS417_00945: PS417_00945 - sulfate ABC transporter ATP-binding protein, at 211,281 to 212,261
_00945
PS417_00950: PS417_00950 - membrane protein, at 212,332 to 212,856
_00950
PS417_00955: PS417_00955 - Crp/Fnr family transcriptional regulator, at 212,940 to 213,626
_00955
PS417_00960: PS417_00960 - transcriptional regulator, at 213,664 to 214,029
_00960
PS417_00965: PS417_00965 - AraC family transcriptional regulator, at 214,157 to 215,161
_00965
Position (kb) 212
213
214 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 211.980 kb on + strand, within PS417_00945 at 212.452 kb on + strand, within PS417_00950 at 212.502 kb on - strand, within PS417_00950 at 212.505 kb on - strand, within PS417_00950 at 212.860 kb on + strand at 212.871 kb on + strand at 212.871 kb on + strand at 212.872 kb on - strand at 212.872 kb on - strand at 213.014 kb on + strand, within PS417_00955 at 213.015 kb on - strand, within PS417_00955 at 213.015 kb on - strand, within PS417_00955 at 213.015 kb on - strand, within PS417_00955 at 213.015 kb on - strand, within PS417_00955 at 213.060 kb on + strand, within PS417_00955 at 213.061 kb on - strand, within PS417_00955 at 213.061 kb on - strand, within PS417_00955 at 213.061 kb on - strand, within PS417_00955 at 213.096 kb on + strand, within PS417_00955 at 213.289 kb on + strand, within PS417_00955 at 213.289 kb on + strand, within PS417_00955 at 213.290 kb on - strand, within PS417_00955 at 213.290 kb on - strand, within PS417_00955 at 213.464 kb on - strand, within PS417_00955 at 213.464 kb on - strand, within PS417_00955 at 213.664 kb on - strand at 213.952 kb on + strand, within PS417_00960 at 213.953 kb on - strand, within PS417_00960 at 213.953 kb on - strand, within PS417_00960
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 211,980 + PS417_00945 0.71 -0.5 212,452 + PS417_00950 0.23 -1.0 212,502 - PS417_00950 0.32 +0.1 212,505 - PS417_00950 0.33 -0.6 212,860 + -0.3 212,871 + +0.1 212,871 + +1.6 212,872 - -2.9 212,872 - +0.7 213,014 + PS417_00955 0.11 -0.2 213,015 - PS417_00955 0.11 +3.3 213,015 - PS417_00955 0.11 +0.7 213,015 - PS417_00955 0.11 +0.3 213,015 - PS417_00955 0.11 +0.2 213,060 + PS417_00955 0.17 +0.3 213,061 - PS417_00955 0.18 +0.3 213,061 - PS417_00955 0.18 -0.5 213,061 - PS417_00955 0.18 -1.2 213,096 + PS417_00955 0.23 -0.3 213,289 + PS417_00955 0.51 -0.5 213,289 + PS417_00955 0.51 +1.9 213,290 - PS417_00955 0.51 -1.2 213,290 - PS417_00955 0.51 +0.3 213,464 - PS417_00955 0.76 +1.7 213,464 - PS417_00955 0.76 +1.5 213,664 - +0.4 213,952 + PS417_00960 0.79 +1.1 213,953 - PS417_00960 0.79 +1.0 213,953 - PS417_00960 0.79 -0.9
Or see this region's nucleotide sequence