Experiment: Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_08815 and PS417_08820 are separated by 134 nucleotides PS417_08820 and PS417_08825 are separated by 148 nucleotides PS417_08825 and PS417_08830 are separated by 134 nucleotides
PS417_08815: PS417_08815 - GlcG protein, at 1,918,663 to 1,919,103
_08815
PS417_08820: PS417_08820 - transposase, at 1,919,238 to 1,919,696
_08820
PS417_08825: PS417_08825 - TetR family transcriptional regulator, at 1,919,845 to 1,920,450
_08825
PS417_08830: PS417_08830 - membrane protein, at 1,920,585 to 1,921,499
_08830
Position (kb) 1919
1920
1921 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1919.023 kb on - strand, within PS417_08815 at 1919.119 kb on - strand at 1919.119 kb on - strand at 1919.171 kb on + strand at 1919.171 kb on + strand at 1919.172 kb on - strand at 1919.172 kb on - strand at 1919.172 kb on - strand at 1919.172 kb on - strand at 1919.172 kb on - strand at 1919.172 kb on - strand at 1919.183 kb on + strand at 1919.240 kb on - strand at 1919.317 kb on + strand, within PS417_08820 at 1919.317 kb on + strand, within PS417_08820 at 1919.317 kb on + strand, within PS417_08820 at 1919.318 kb on - strand, within PS417_08820 at 1919.318 kb on - strand, within PS417_08820 at 1919.387 kb on + strand, within PS417_08820 at 1919.632 kb on + strand, within PS417_08820 at 1919.633 kb on - strand, within PS417_08820 at 1919.633 kb on - strand, within PS417_08820 at 1919.636 kb on + strand, within PS417_08820 at 1919.732 kb on + strand at 1919.733 kb on - strand at 1919.733 kb on - strand at 1919.741 kb on + strand at 1919.746 kb on - strand at 1919.837 kb on + strand at 1919.838 kb on - strand at 1919.838 kb on - strand at 1919.841 kb on + strand at 1919.842 kb on - strand at 1919.842 kb on - strand at 1919.842 kb on - strand at 1919.904 kb on - strand at 1920.194 kb on + strand, within PS417_08825 at 1920.311 kb on + strand at 1920.312 kb on - strand, within PS417_08825 at 1920.317 kb on + strand, within PS417_08825 at 1920.318 kb on - strand, within PS417_08825 at 1920.318 kb on - strand, within PS417_08825 at 1920.318 kb on - strand, within PS417_08825 at 1920.548 kb on - strand at 1920.873 kb on + strand, within PS417_08830 at 1921.111 kb on + strand, within PS417_08830 at 1921.111 kb on + strand, within PS417_08830 at 1921.260 kb on + strand, within PS417_08830 at 1921.260 kb on + strand, within PS417_08830
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 1,919,023 - PS417_08815 0.82 -1.3 1,919,119 - +0.1 1,919,119 - -0.4 1,919,171 + +1.4 1,919,171 + +0.1 1,919,172 - +0.2 1,919,172 - -0.3 1,919,172 - +0.0 1,919,172 - -3.0 1,919,172 - -2.9 1,919,172 - +0.3 1,919,183 + -0.3 1,919,240 - -0.2 1,919,317 + PS417_08820 0.17 +0.0 1,919,317 + PS417_08820 0.17 -0.2 1,919,317 + PS417_08820 0.17 +0.9 1,919,318 - PS417_08820 0.17 -2.0 1,919,318 - PS417_08820 0.17 -1.1 1,919,387 + PS417_08820 0.32 -1.2 1,919,632 + PS417_08820 0.86 +1.0 1,919,633 - PS417_08820 0.86 +1.0 1,919,633 - PS417_08820 0.86 -3.3 1,919,636 + PS417_08820 0.87 -0.3 1,919,732 + +0.0 1,919,733 - -0.2 1,919,733 - +0.8 1,919,741 + -0.0 1,919,746 - -0.6 1,919,837 + -0.7 1,919,838 - -0.6 1,919,838 - -0.3 1,919,841 + +1.0 1,919,842 - -1.0 1,919,842 - +0.2 1,919,842 - -0.6 1,919,904 - -0.4 1,920,194 + PS417_08825 0.58 +0.0 1,920,311 + -1.8 1,920,312 - PS417_08825 0.77 -0.2 1,920,317 + PS417_08825 0.78 +0.0 1,920,318 - PS417_08825 0.78 -1.2 1,920,318 - PS417_08825 0.78 -1.9 1,920,318 - PS417_08825 0.78 -1.3 1,920,548 - +1.9 1,920,873 + PS417_08830 0.31 +0.4 1,921,111 + PS417_08830 0.57 -0.8 1,921,111 + PS417_08830 0.57 -0.7 1,921,260 + PS417_08830 0.74 +0.7 1,921,260 + PS417_08830 0.74 +0.4
Or see this region's nucleotide sequence