Strain Fitness in Pseudomonas simiae WCS417 around PS417_00005

Experiment: Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_00005 and PS417_00010 are separated by 38 nucleotides PS417_00005: PS417_00005 - chromosomal replication initiation protein, at 225 to 1,742 _00005 PS417_00010: PS417_00010 - DNA polymerase III subunit beta, at 1,781 to 2,884 _00010 Position (kb) 0 1 2Strain fitness (log2 ratio) -2 -1 0 1at 0.045 kb on + strandat 0.046 kb on - strandat 0.046 kb on - strandat 0.079 kb on + strandat 0.080 kb on - strandat 0.080 kb on - strandat 0.104 kb on - strandat 0.146 kb on + strandat 0.147 kb on - strandat 0.147 kb on - strandat 1.759 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
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45 + -0.7
46 - -0.5
46 - -0.5
79 + -1.8
80 - +0.1
80 - -1.6
104 - +1.6
146 + +1.1
147 - -2.6
147 - -1.1
1,759 + -0.2

Or see this region's nucleotide sequence