Strain Fitness in Pseudomonas simiae WCS417 around PS417_04600

Experiment: Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_04595 and PS417_04600 overlap by 4 nucleotidesPS417_04600 and PS417_04605 overlap by 4 nucleotidesPS417_04605 and PS417_04610 overlap by 4 nucleotides PS417_04595: PS417_04595 - cell division protein MraZ, at 1,017,804 to 1,018,259 _04595 PS417_04600: PS417_04600 - 16S rRNA methyltransferase, at 1,018,256 to 1,019,203 _04600 PS417_04605: PS417_04605 - cell division protein FtsL, at 1,019,200 to 1,019,493 _04605 PS417_04610: PS417_04610 - cell division protein, at 1,019,490 to 1,021,235 _04610 Position (kb) 1018 1019 1020Strain fitness (log2 ratio) -2 -1 0 1at 1017.487 kb on + strandat 1017.490 kb on + strandat 1017.491 kb on - strandat 1017.599 kb on + strandat 1017.724 kb on + strandat 1017.724 kb on + strandat 1017.937 kb on + strand, within PS417_04595

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
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1,017,487 + -0.7
1,017,490 + -0.6
1,017,491 - +0.6
1,017,599 + +1.0
1,017,724 + -2.1
1,017,724 + -1.0
1,017,937 + PS417_04595 0.29 -2.5

Or see this region's nucleotide sequence