Experiment: Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_04105 and PS417_04110 are separated by 188 nucleotides PS417_04110 and PS417_04115 are separated by 141 nucleotides PS417_04115 and PS417_04120 are separated by 24 nucleotides
PS417_04105: PS417_04105 - ABC transporter ATP-binding protein, at 922,796 to 924,520
_04105
PS417_04110: PS417_04110 - cytochrome D ubiquinol oxidase subunit III, at 924,709 to 925,146
_04110
PS417_04115: PS417_04115 - alpha/beta hydrolase, at 925,288 to 925,923
_04115
PS417_04120: PS417_04120 - tryptophan--tRNA ligase, at 925,948 to 927,303
_04120
Position (kb) 925
926 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 924.338 kb on + strand, within PS417_04105 at 924.338 kb on + strand, within PS417_04105 at 924.338 kb on + strand, within PS417_04105 at 924.339 kb on - strand, within PS417_04105 at 924.339 kb on - strand, within PS417_04105 at 924.339 kb on - strand, within PS417_04105 at 924.339 kb on - strand, within PS417_04105 at 924.339 kb on - strand, within PS417_04105 at 924.339 kb on - strand, within PS417_04105 at 924.339 kb on - strand, within PS417_04105 at 924.339 kb on - strand, within PS417_04105 at 924.390 kb on - strand at 924.561 kb on + strand at 924.568 kb on + strand at 924.568 kb on + strand at 924.569 kb on - strand at 924.710 kb on + strand at 924.726 kb on - strand at 925.203 kb on - strand at 925.203 kb on - strand at 925.245 kb on - strand at 925.426 kb on - strand, within PS417_04115 at 925.426 kb on - strand, within PS417_04115 at 925.433 kb on + strand, within PS417_04115 at 925.474 kb on - strand, within PS417_04115 at 925.524 kb on + strand, within PS417_04115 at 925.801 kb on + strand, within PS417_04115 at 925.935 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 924,338 + PS417_04105 0.89 +0.2 924,338 + PS417_04105 0.89 -0.1 924,338 + PS417_04105 0.89 +1.6 924,339 - PS417_04105 0.89 -1.1 924,339 - PS417_04105 0.89 -0.4 924,339 - PS417_04105 0.89 -1.6 924,339 - PS417_04105 0.89 -0.6 924,339 - PS417_04105 0.89 -1.3 924,339 - PS417_04105 0.89 -1.9 924,339 - PS417_04105 0.89 -1.2 924,339 - PS417_04105 0.89 +0.8 924,390 - -1.0 924,561 + +0.5 924,568 + -0.5 924,568 + -1.3 924,569 - +1.4 924,710 + +0.9 924,726 - -2.9 925,203 - +0.7 925,203 - -1.9 925,245 - -0.4 925,426 - PS417_04115 0.22 +0.2 925,426 - PS417_04115 0.22 -0.4 925,433 + PS417_04115 0.23 -1.4 925,474 - PS417_04115 0.29 -1.7 925,524 + PS417_04115 0.37 +0.7 925,801 + PS417_04115 0.81 +0.9 925,935 + -2.2
Or see this region's nucleotide sequence