Experiment: Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_03945 and PS417_03950 are separated by 126 nucleotides PS417_03950 and PS417_03955 overlap by 54 nucleotides PS417_03955 and PS417_03960 are separated by 2 nucleotides
PS417_03945: PS417_03945 - chemotaxis protein, at 880,925 to 882,955
_03945
PS417_03950: PS417_03950 - hypothetical protein, at 883,082 to 883,513
_03950
PS417_03955: PS417_03955 - hydrolase TatD, at 883,460 to 884,236
_03955
PS417_03960: PS417_03960 - transcriptional regulator, at 884,239 to 885,234
_03960
Position (kb) 883
884
885 Strain fitness (log2 ratio) -1
0
1
2 at 882.679 kb on + strand, within PS417_03945 at 882.967 kb on - strand at 883.126 kb on + strand at 883.135 kb on + strand, within PS417_03950 at 883.136 kb on - strand, within PS417_03950 at 883.380 kb on + strand, within PS417_03950 at 883.380 kb on + strand, within PS417_03950 at 883.381 kb on - strand, within PS417_03950 at 883.381 kb on - strand, within PS417_03950 at 883.381 kb on - strand, within PS417_03950 at 883.381 kb on - strand, within PS417_03950 at 883.381 kb on - strand, within PS417_03950 at 883.461 kb on + strand at 883.590 kb on + strand, within PS417_03955 at 883.629 kb on - strand, within PS417_03955 at 883.732 kb on - strand, within PS417_03955 at 883.932 kb on + strand, within PS417_03955 at 883.932 kb on + strand, within PS417_03955 at 884.118 kb on + strand, within PS417_03955 at 884.118 kb on + strand, within PS417_03955 at 884.118 kb on + strand, within PS417_03955 at 884.119 kb on - strand, within PS417_03955 at 884.119 kb on - strand, within PS417_03955 at 884.253 kb on + strand at 884.253 kb on + strand at 885.179 kb on + strand at 885.179 kb on + strand at 885.179 kb on + strand at 885.180 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 882,679 + PS417_03945 0.86 -0.1 882,967 - +0.5 883,126 + +2.5 883,135 + PS417_03950 0.12 +0.3 883,136 - PS417_03950 0.12 +1.4 883,380 + PS417_03950 0.69 +2.1 883,380 + PS417_03950 0.69 +0.3 883,381 - PS417_03950 0.69 +0.0 883,381 - PS417_03950 0.69 -0.2 883,381 - PS417_03950 0.69 +1.0 883,381 - PS417_03950 0.69 -0.1 883,381 - PS417_03950 0.69 -1.4 883,461 + -0.4 883,590 + PS417_03955 0.17 -0.2 883,629 - PS417_03955 0.22 +0.7 883,732 - PS417_03955 0.35 +0.8 883,932 + PS417_03955 0.61 -0.2 883,932 + PS417_03955 0.61 +0.7 884,118 + PS417_03955 0.85 +1.6 884,118 + PS417_03955 0.85 +0.3 884,118 + PS417_03955 0.85 -0.1 884,119 - PS417_03955 0.85 +0.8 884,119 - PS417_03955 0.85 -0.2 884,253 + -1.1 884,253 + +0.7 885,179 + +0.9 885,179 + -0.7 885,179 + +1.6 885,180 - -0.9
Or see this region's nucleotide sequence