Experiment: Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_03005 and PS417_03010 are separated by 131 nucleotides PS417_03010 and PS417_03015 are separated by 178 nucleotides
PS417_03005: PS417_03005 - arginine decarboxylase, at 686,790 to 688,703
_03005
PS417_03010: PS417_03010 - XRE family transcriptional regulator, at 688,835 to 690,178
_03010
PS417_03015: PS417_03015 - hypothetical protein, at 690,357 to 695,255
_03015
Position (kb) 688
689
690
691 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 688.008 kb on + strand, within PS417_03005 at 688.008 kb on + strand, within PS417_03005 at 688.009 kb on - strand, within PS417_03005 at 688.083 kb on + strand, within PS417_03005 at 688.083 kb on + strand, within PS417_03005 at 688.084 kb on - strand, within PS417_03005 at 688.110 kb on - strand, within PS417_03005 at 688.182 kb on + strand, within PS417_03005 at 688.182 kb on + strand, within PS417_03005 at 688.182 kb on + strand, within PS417_03005 at 688.183 kb on - strand, within PS417_03005 at 688.339 kb on - strand, within PS417_03005 at 688.401 kb on + strand, within PS417_03005 at 688.401 kb on + strand, within PS417_03005 at 688.401 kb on + strand, within PS417_03005 at 688.401 kb on + strand, within PS417_03005 at 688.431 kb on + strand, within PS417_03005 at 688.451 kb on + strand, within PS417_03005 at 688.491 kb on + strand, within PS417_03005 at 688.574 kb on - strand at 688.702 kb on - strand at 688.702 kb on - strand at 688.829 kb on - strand at 688.840 kb on + strand at 688.840 kb on + strand at 688.841 kb on - strand at 688.843 kb on + strand at 688.843 kb on + strand at 688.844 kb on - strand at 688.847 kb on + strand at 688.868 kb on + strand at 689.059 kb on - strand, within PS417_03010 at 689.095 kb on - strand, within PS417_03010 at 689.095 kb on - strand, within PS417_03010 at 689.103 kb on + strand, within PS417_03010 at 689.104 kb on - strand, within PS417_03010 at 689.104 kb on - strand, within PS417_03010 at 689.152 kb on + strand, within PS417_03010 at 689.153 kb on - strand, within PS417_03010 at 689.330 kb on + strand, within PS417_03010 at 689.330 kb on + strand, within PS417_03010 at 689.330 kb on + strand, within PS417_03010 at 689.724 kb on + strand, within PS417_03010 at 689.725 kb on - strand, within PS417_03010 at 689.855 kb on + strand, within PS417_03010 at 689.995 kb on + strand, within PS417_03010 at 689.996 kb on - strand, within PS417_03010 at 689.997 kb on + strand, within PS417_03010 at 689.997 kb on + strand, within PS417_03010 at 689.997 kb on + strand, within PS417_03010 at 689.998 kb on - strand, within PS417_03010 at 690.167 kb on + strand at 690.167 kb on + strand at 690.168 kb on - strand at 690.316 kb on + strand at 690.316 kb on + strand at 690.317 kb on - strand at 690.317 kb on - strand at 690.317 kb on - strand at 690.317 kb on - strand at 690.317 kb on - strand at 690.317 kb on - strand at 690.318 kb on + strand at 690.318 kb on + strand at 690.319 kb on - strand at 690.319 kb on - strand at 690.319 kb on - strand at 690.319 kb on - strand at 690.320 kb on + strand at 690.320 kb on + strand at 690.320 kb on + strand at 690.320 kb on + strand at 690.320 kb on + strand at 690.320 kb on + strand at 690.321 kb on - strand at 690.321 kb on - strand at 690.362 kb on + strand at 690.362 kb on + strand at 690.363 kb on - strand at 690.553 kb on + strand at 690.553 kb on + strand at 690.554 kb on - strand at 690.996 kb on + strand, within PS417_03015 at 690.996 kb on + strand, within PS417_03015 at 691.161 kb on + strand, within PS417_03015 at 691.162 kb on - strand, within PS417_03015 at 691.162 kb on - strand, within PS417_03015
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 688,008 + PS417_03005 0.64 +3.3 688,008 + PS417_03005 0.64 -0.7 688,009 - PS417_03005 0.64 -0.1 688,083 + PS417_03005 0.68 +0.1 688,083 + PS417_03005 0.68 +1.9 688,084 - PS417_03005 0.68 +0.3 688,110 - PS417_03005 0.69 -0.4 688,182 + PS417_03005 0.73 +1.9 688,182 + PS417_03005 0.73 +0.9 688,182 + PS417_03005 0.73 +0.1 688,183 - PS417_03005 0.73 -0.3 688,339 - PS417_03005 0.81 -0.5 688,401 + PS417_03005 0.84 +0.1 688,401 + PS417_03005 0.84 +0.2 688,401 + PS417_03005 0.84 -2.1 688,401 + PS417_03005 0.84 +0.3 688,431 + PS417_03005 0.86 +4.5 688,451 + PS417_03005 0.87 -1.4 688,491 + PS417_03005 0.89 +0.9 688,574 - +0.4 688,702 - +0.6 688,702 - +0.0 688,829 - +0.3 688,840 + -0.7 688,840 + +1.6 688,841 - -1.1 688,843 + +0.1 688,843 + +0.4 688,844 - +0.7 688,847 + +1.3 688,868 + -0.4 689,059 - PS417_03010 0.17 -0.1 689,095 - PS417_03010 0.19 -0.4 689,095 - PS417_03010 0.19 -0.5 689,103 + PS417_03010 0.20 -1.8 689,104 - PS417_03010 0.20 +0.2 689,104 - PS417_03010 0.20 +1.5 689,152 + PS417_03010 0.24 +0.2 689,153 - PS417_03010 0.24 -1.3 689,330 + PS417_03010 0.37 -1.4 689,330 + PS417_03010 0.37 +0.4 689,330 + PS417_03010 0.37 +0.5 689,724 + PS417_03010 0.66 -0.5 689,725 - PS417_03010 0.66 -0.3 689,855 + PS417_03010 0.76 +0.1 689,995 + PS417_03010 0.86 +0.9 689,996 - PS417_03010 0.86 -0.0 689,997 + PS417_03010 0.86 -0.6 689,997 + PS417_03010 0.86 -0.0 689,997 + PS417_03010 0.86 +0.0 689,998 - PS417_03010 0.87 -0.1 690,167 + +0.5 690,167 + +1.7 690,168 - +1.8 690,316 + -0.1 690,316 + +0.5 690,317 - -1.2 690,317 - -2.2 690,317 - +0.4 690,317 - +0.9 690,317 - +0.1 690,317 - -1.5 690,318 + -0.6 690,318 + -0.6 690,319 - -0.1 690,319 - -2.2 690,319 - +0.3 690,319 - -0.2 690,320 + -1.2 690,320 + -0.1 690,320 + +0.3 690,320 + -0.3 690,320 + -0.1 690,320 + -0.6 690,321 - +3.1 690,321 - -0.1 690,362 + +2.8 690,362 + -1.8 690,363 - -0.1 690,553 + +0.4 690,553 + -0.2 690,554 - -0.3 690,996 + PS417_03015 0.13 -0.3 690,996 + PS417_03015 0.13 -0.2 691,161 + PS417_03015 0.16 -0.7 691,162 - PS417_03015 0.16 -0.9 691,162 - PS417_03015 0.16 -0.6
Or see this region's nucleotide sequence