Experiment: Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_26845 and PS417_26850 are separated by 28 nucleotides PS417_26850 and PS417_26855 are separated by 85 nucleotides
PS417_26845: PS417_26845 - coniferyl aldehyde dehydrogenase, at 5,796,347 to 5,797,774
_26845
PS417_26850: PS417_26850 - twin-arginine translocation pathway signal protein, at 5,797,803 to 5,798,348
_26850
PS417_26855: PS417_26855 - GMC family oxidoreductase, at 5,798,434 to 5,800,029
_26855
Position (kb) 5797
5798
5799 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5797.094 kb on - strand, within PS417_26845 at 5797.133 kb on + strand, within PS417_26845 at 5797.134 kb on - strand, within PS417_26845 at 5797.275 kb on - strand, within PS417_26845 at 5797.319 kb on + strand, within PS417_26845 at 5797.356 kb on + strand, within PS417_26845 at 5797.457 kb on + strand, within PS417_26845 at 5797.458 kb on - strand, within PS417_26845 at 5797.458 kb on - strand, within PS417_26845 at 5797.458 kb on - strand, within PS417_26845 at 5797.490 kb on + strand, within PS417_26845 at 5797.491 kb on - strand, within PS417_26845 at 5797.493 kb on + strand, within PS417_26845 at 5797.494 kb on - strand, within PS417_26845 at 5797.494 kb on - strand, within PS417_26845 at 5797.494 kb on - strand, within PS417_26845 at 5797.494 kb on - strand, within PS417_26845 at 5797.959 kb on - strand, within PS417_26850 at 5798.346 kb on + strand at 5798.412 kb on - strand at 5798.665 kb on + strand, within PS417_26855 at 5798.665 kb on + strand, within PS417_26855 at 5798.666 kb on - strand, within PS417_26855 at 5798.666 kb on - strand, within PS417_26855 at 5798.666 kb on - strand, within PS417_26855 at 5798.782 kb on - strand, within PS417_26855 at 5798.835 kb on + strand, within PS417_26855 at 5798.927 kb on + strand, within PS417_26855 at 5798.928 kb on - strand, within PS417_26855 at 5798.980 kb on - strand, within PS417_26855 at 5799.007 kb on + strand, within PS417_26855 at 5799.097 kb on + strand, within PS417_26855 at 5799.220 kb on + strand, within PS417_26855 at 5799.220 kb on + strand, within PS417_26855 at 5799.220 kb on + strand, within PS417_26855 at 5799.220 kb on + strand, within PS417_26855 at 5799.221 kb on - strand, within PS417_26855
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 5,797,094 - PS417_26845 0.52 -0.2 5,797,133 + PS417_26845 0.55 -0.1 5,797,134 - PS417_26845 0.55 -0.2 5,797,275 - PS417_26845 0.65 -1.1 5,797,319 + PS417_26845 0.68 -0.0 5,797,356 + PS417_26845 0.71 +0.1 5,797,457 + PS417_26845 0.78 +1.0 5,797,458 - PS417_26845 0.78 +0.3 5,797,458 - PS417_26845 0.78 -0.5 5,797,458 - PS417_26845 0.78 -1.2 5,797,490 + PS417_26845 0.80 +0.2 5,797,491 - PS417_26845 0.80 +0.5 5,797,493 + PS417_26845 0.80 +0.0 5,797,494 - PS417_26845 0.80 -0.2 5,797,494 - PS417_26845 0.80 +0.7 5,797,494 - PS417_26845 0.80 -0.3 5,797,494 - PS417_26845 0.80 -0.7 5,797,959 - PS417_26850 0.29 -3.3 5,798,346 + +1.0 5,798,412 - -2.0 5,798,665 + PS417_26855 0.14 -0.2 5,798,665 + PS417_26855 0.14 +1.6 5,798,666 - PS417_26855 0.15 -1.3 5,798,666 - PS417_26855 0.15 -0.9 5,798,666 - PS417_26855 0.15 +1.0 5,798,782 - PS417_26855 0.22 -0.4 5,798,835 + PS417_26855 0.25 +0.8 5,798,927 + PS417_26855 0.31 -0.2 5,798,928 - PS417_26855 0.31 +0.3 5,798,980 - PS417_26855 0.34 +0.3 5,799,007 + PS417_26855 0.36 +2.0 5,799,097 + PS417_26855 0.42 -0.0 5,799,220 + PS417_26855 0.49 -1.6 5,799,220 + PS417_26855 0.49 +0.2 5,799,220 + PS417_26855 0.49 -1.7 5,799,220 + PS417_26855 0.49 -0.6 5,799,221 - PS417_26855 0.49 -1.2
Or see this region's nucleotide sequence