Experiment: Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_26005 and PS417_26010 are separated by 92 nucleotides PS417_26010 and PS417_26015 are separated by 58 nucleotides PS417_26015 and PS417_26020 are separated by 78 nucleotides
PS417_26005: PS417_26005 - biotin synthase, at 5,618,587 to 5,619,642
_26005
PS417_26010: PS417_26010 - amidophosphoribosyltransferase, at 5,619,735 to 5,620,472
_26010
PS417_26015: PS417_26015 - ModE family transcriptional regulator, at 5,620,531 to 5,621,295
_26015
PS417_26020: PS417_26020 - transcriptional initiation protein Tat, at 5,621,374 to 5,623,272
_26020
Position (kb) 5620
5621
5622 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5619.658 kb on + strand at 5619.658 kb on + strand at 5619.719 kb on + strand at 5619.720 kb on - strand at 5619.720 kb on - strand at 5619.978 kb on + strand, within PS417_26010 at 5619.979 kb on - strand, within PS417_26010 at 5619.979 kb on - strand, within PS417_26010 at 5620.162 kb on - strand, within PS417_26010 at 5620.162 kb on - strand, within PS417_26010 at 5620.205 kb on - strand, within PS417_26010 at 5620.363 kb on + strand, within PS417_26010 at 5620.363 kb on + strand, within PS417_26010 at 5620.438 kb on - strand at 5620.438 kb on - strand at 5620.524 kb on + strand at 5620.525 kb on - strand at 5620.617 kb on + strand, within PS417_26015 at 5620.617 kb on + strand, within PS417_26015 at 5620.618 kb on - strand, within PS417_26015 at 5620.618 kb on - strand, within PS417_26015 at 5620.618 kb on - strand, within PS417_26015 at 5620.652 kb on - strand, within PS417_26015 at 5620.652 kb on - strand, within PS417_26015 at 5620.799 kb on + strand, within PS417_26015 at 5620.799 kb on + strand, within PS417_26015 at 5620.800 kb on - strand, within PS417_26015 at 5621.007 kb on - strand, within PS417_26015 at 5621.081 kb on + strand, within PS417_26015 at 5621.186 kb on + strand, within PS417_26015 at 5621.187 kb on - strand, within PS417_26015 at 5621.238 kb on + strand at 5621.305 kb on + strand at 5621.309 kb on + strand at 5621.309 kb on + strand at 5621.310 kb on - strand at 5621.381 kb on + strand at 5621.384 kb on + strand at 5621.384 kb on + strand at 5621.385 kb on - strand at 5621.583 kb on + strand, within PS417_26020 at 5621.583 kb on + strand, within PS417_26020 at 5621.584 kb on - strand, within PS417_26020 at 5621.600 kb on - strand, within PS417_26020 at 5621.791 kb on + strand, within PS417_26020 at 5621.792 kb on - strand, within PS417_26020 at 5621.792 kb on - strand, within PS417_26020 at 5621.792 kb on - strand, within PS417_26020 at 5621.798 kb on - strand, within PS417_26020 at 5621.883 kb on - strand, within PS417_26020 at 5621.926 kb on + strand, within PS417_26020 at 5622.018 kb on + strand, within PS417_26020 at 5622.076 kb on + strand, within PS417_26020 at 5622.076 kb on + strand, within PS417_26020 at 5622.076 kb on + strand, within PS417_26020 at 5622.077 kb on - strand, within PS417_26020 at 5622.077 kb on - strand, within PS417_26020 at 5622.157 kb on + strand, within PS417_26020 at 5622.158 kb on - strand, within PS417_26020
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 5,619,658 + -0.6 5,619,658 + -2.4 5,619,719 + -2.7 5,619,720 - -1.3 5,619,720 - +1.1 5,619,978 + PS417_26010 0.33 -1.0 5,619,979 - PS417_26010 0.33 -1.0 5,619,979 - PS417_26010 0.33 +0.4 5,620,162 - PS417_26010 0.58 +1.4 5,620,162 - PS417_26010 0.58 -0.1 5,620,205 - PS417_26010 0.64 -1.3 5,620,363 + PS417_26010 0.85 -0.4 5,620,363 + PS417_26010 0.85 -0.5 5,620,438 - -0.6 5,620,438 - -0.0 5,620,524 + -0.2 5,620,525 - -0.1 5,620,617 + PS417_26015 0.11 -1.3 5,620,617 + PS417_26015 0.11 -0.0 5,620,618 - PS417_26015 0.11 -1.0 5,620,618 - PS417_26015 0.11 -0.8 5,620,618 - PS417_26015 0.11 -0.1 5,620,652 - PS417_26015 0.16 -0.2 5,620,652 - PS417_26015 0.16 +0.8 5,620,799 + PS417_26015 0.35 +0.4 5,620,799 + PS417_26015 0.35 -0.0 5,620,800 - PS417_26015 0.35 -0.3 5,621,007 - PS417_26015 0.62 -0.3 5,621,081 + PS417_26015 0.72 -0.3 5,621,186 + PS417_26015 0.86 +0.3 5,621,187 - PS417_26015 0.86 -0.3 5,621,238 + -0.2 5,621,305 + -0.2 5,621,309 + +0.8 5,621,309 + +1.0 5,621,310 - +1.0 5,621,381 + -0.0 5,621,384 + +0.5 5,621,384 + -0.4 5,621,385 - +0.1 5,621,583 + PS417_26020 0.11 +0.4 5,621,583 + PS417_26020 0.11 -0.3 5,621,584 - PS417_26020 0.11 -1.7 5,621,600 - PS417_26020 0.12 +0.7 5,621,791 + PS417_26020 0.22 -0.4 5,621,792 - PS417_26020 0.22 -1.3 5,621,792 - PS417_26020 0.22 +0.8 5,621,792 - PS417_26020 0.22 +2.6 5,621,798 - PS417_26020 0.22 -0.1 5,621,883 - PS417_26020 0.27 -0.7 5,621,926 + PS417_26020 0.29 +0.5 5,622,018 + PS417_26020 0.34 -2.3 5,622,076 + PS417_26020 0.37 +0.1 5,622,076 + PS417_26020 0.37 +0.0 5,622,076 + PS417_26020 0.37 -0.6 5,622,077 - PS417_26020 0.37 +0.6 5,622,077 - PS417_26020 0.37 -0.0 5,622,157 + PS417_26020 0.41 +0.3 5,622,158 - PS417_26020 0.41 +0.7
Or see this region's nucleotide sequence