Experiment: Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_25900 and PS417_25905 are separated by 40 nucleotides PS417_25905 and PS417_25910 are separated by 167 nucleotides PS417_25910 and PS417_25915 are separated by 10 nucleotides PS417_25915 and PS417_25920 are separated by 48 nucleotides
PS417_25900: PS417_25900 - LysR family transcriptional regulator, at 5,594,663 to 5,595,532
_25900
PS417_25905: PS417_25905 - AsnC family transcriptional regulator, at 5,595,573 to 5,596,019
_25905
PS417_25910: PS417_25910 - amine oxidase, at 5,596,187 to 5,597,869
_25910
PS417_25915: PS417_25915 - carbon-nitrogen hydrolase, at 5,597,880 to 5,598,674
_25915
PS417_25920: PS417_25920 - pyrroloquinoline quinone biosynthesis protein PqqF, at 5,598,723 to 5,601,065
_25920
Position (kb) 5596
5597
5598 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5595.222 kb on + strand, within PS417_25900 at 5595.222 kb on + strand, within PS417_25900 at 5595.222 kb on + strand, within PS417_25900 at 5595.223 kb on - strand, within PS417_25900 at 5595.223 kb on - strand, within PS417_25900 at 5595.223 kb on - strand, within PS417_25900 at 5595.223 kb on - strand, within PS417_25900 at 5595.292 kb on - strand, within PS417_25900 at 5595.292 kb on - strand, within PS417_25900 at 5595.530 kb on + strand at 5595.530 kb on + strand at 5595.777 kb on + strand, within PS417_25905 at 5595.778 kb on - strand, within PS417_25905 at 5595.882 kb on + strand, within PS417_25905 at 5595.883 kb on - strand, within PS417_25905 at 5596.120 kb on + strand at 5596.121 kb on - strand at 5596.121 kb on - strand at 5596.122 kb on + strand at 5596.123 kb on - strand at 5596.407 kb on - strand, within PS417_25910 at 5596.407 kb on - strand, within PS417_25910 at 5596.517 kb on + strand, within PS417_25910 at 5596.518 kb on - strand, within PS417_25910 at 5596.518 kb on - strand, within PS417_25910 at 5596.523 kb on + strand, within PS417_25910 at 5596.589 kb on - strand, within PS417_25910 at 5597.138 kb on + strand, within PS417_25910 at 5597.138 kb on + strand, within PS417_25910 at 5597.138 kb on + strand, within PS417_25910 at 5597.139 kb on - strand, within PS417_25910 at 5597.264 kb on + strand, within PS417_25910 at 5597.264 kb on + strand at 5597.384 kb on + strand, within PS417_25910 at 5597.519 kb on + strand, within PS417_25910 at 5597.633 kb on + strand, within PS417_25910 at 5597.634 kb on - strand, within PS417_25910 at 5597.648 kb on + strand, within PS417_25910 at 5597.648 kb on + strand, within PS417_25910 at 5597.648 kb on + strand, within PS417_25910 at 5597.648 kb on + strand, within PS417_25910 at 5597.648 kb on + strand, within PS417_25910 at 5597.649 kb on - strand, within PS417_25910 at 5597.649 kb on - strand, within PS417_25910 at 5597.649 kb on - strand, within PS417_25910 at 5597.649 kb on - strand, within PS417_25910 at 5597.699 kb on - strand, within PS417_25910 at 5597.699 kb on - strand, within PS417_25910 at 5597.832 kb on + strand at 5597.896 kb on - strand at 5597.923 kb on + strand at 5598.312 kb on + strand, within PS417_25915 at 5598.453 kb on + strand, within PS417_25915 at 5598.453 kb on + strand, within PS417_25915 at 5598.462 kb on + strand, within PS417_25915 at 5598.625 kb on - strand at 5598.651 kb on + strand at 5598.705 kb on + strand at 5598.705 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 5,595,222 + PS417_25900 0.64 -1.2 5,595,222 + PS417_25900 0.64 +1.4 5,595,222 + PS417_25900 0.64 +0.4 5,595,223 - PS417_25900 0.64 -0.8 5,595,223 - PS417_25900 0.64 -0.4 5,595,223 - PS417_25900 0.64 -0.1 5,595,223 - PS417_25900 0.64 -0.4 5,595,292 - PS417_25900 0.72 -1.3 5,595,292 - PS417_25900 0.72 +2.6 5,595,530 + +0.4 5,595,530 + -0.9 5,595,777 + PS417_25905 0.46 -0.2 5,595,778 - PS417_25905 0.46 -0.4 5,595,882 + PS417_25905 0.69 -1.2 5,595,883 - PS417_25905 0.69 +0.3 5,596,120 + -0.9 5,596,121 - -2.2 5,596,121 - +0.7 5,596,122 + -1.2 5,596,123 - +1.0 5,596,407 - PS417_25910 0.13 +2.6 5,596,407 - PS417_25910 0.13 +0.6 5,596,517 + PS417_25910 0.20 +1.8 5,596,518 - PS417_25910 0.20 -0.1 5,596,518 - PS417_25910 0.20 +0.2 5,596,523 + PS417_25910 0.20 +0.0 5,596,589 - PS417_25910 0.24 +0.6 5,597,138 + PS417_25910 0.57 -0.8 5,597,138 + PS417_25910 0.57 +0.2 5,597,138 + PS417_25910 0.57 +1.7 5,597,139 - PS417_25910 0.57 +1.1 5,597,264 + PS417_25910 0.64 +1.5 5,597,264 + +3.0 5,597,384 + PS417_25910 0.71 -0.4 5,597,519 + PS417_25910 0.79 +0.4 5,597,633 + PS417_25910 0.86 -0.0 5,597,634 - PS417_25910 0.86 -0.0 5,597,648 + PS417_25910 0.87 +0.4 5,597,648 + PS417_25910 0.87 +0.0 5,597,648 + PS417_25910 0.87 +1.6 5,597,648 + PS417_25910 0.87 +0.1 5,597,648 + PS417_25910 0.87 +0.2 5,597,649 - PS417_25910 0.87 +0.1 5,597,649 - PS417_25910 0.87 -0.5 5,597,649 - PS417_25910 0.87 +2.6 5,597,649 - PS417_25910 0.87 -0.0 5,597,699 - PS417_25910 0.90 -0.0 5,597,699 - PS417_25910 0.90 +0.3 5,597,832 + +0.7 5,597,896 - -0.4 5,597,923 + +0.2 5,598,312 + PS417_25915 0.54 +0.3 5,598,453 + PS417_25915 0.72 +0.7 5,598,453 + PS417_25915 0.72 +1.0 5,598,462 + PS417_25915 0.73 +1.8 5,598,625 - +0.4 5,598,651 + -1.3 5,598,705 + +0.4 5,598,705 + -0.7
Or see this region's nucleotide sequence