Experiment: Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_02420 and PS417_02425 are separated by 15 nucleotides PS417_02425 and PS417_02430 are separated by 57 nucleotides PS417_02430 and PS417_02435 are separated by 166 nucleotides
PS417_02420: PS417_02420 - phosphatidylserine decarboxylase, at 554,751 to 555,611
_02420
PS417_02425: PS417_02425 - thiosulfate sulfurtransferase, at 555,627 to 556,442
_02425
PS417_02430: PS417_02430 - histidine kinase, at 556,500 to 558,035
_02430
PS417_02435: PS417_02435 - flagellar motor protein MotA, at 558,202 to 559,053
_02435
Position (kb) 556
557
558
559 Strain fitness (log2 ratio) -1
0
1
2 at 555.622 kb on - strand at 555.683 kb on - strand at 555.683 kb on - strand at 555.724 kb on + strand, within PS417_02425 at 555.725 kb on - strand, within PS417_02425 at 555.986 kb on - strand, within PS417_02425 at 556.115 kb on - strand, within PS417_02425 at 556.193 kb on - strand, within PS417_02425 at 556.193 kb on - strand, within PS417_02425 at 556.193 kb on - strand, within PS417_02425 at 556.557 kb on - strand at 556.775 kb on + strand, within PS417_02430 at 556.776 kb on - strand, within PS417_02430 at 556.778 kb on + strand, within PS417_02430 at 556.779 kb on - strand, within PS417_02430 at 556.779 kb on - strand, within PS417_02430 at 556.973 kb on + strand, within PS417_02430 at 557.049 kb on + strand, within PS417_02430 at 557.049 kb on + strand, within PS417_02430 at 557.049 kb on + strand, within PS417_02430 at 557.050 kb on - strand at 557.885 kb on + strand at 557.961 kb on + strand at 557.961 kb on + strand at 557.962 kb on - strand at 557.962 kb on - strand at 558.110 kb on + strand at 558.111 kb on - strand at 558.136 kb on + strand at 558.136 kb on + strand at 558.137 kb on - strand at 558.137 kb on - strand at 558.156 kb on - strand at 558.164 kb on + strand at 558.164 kb on + strand at 558.164 kb on + strand at 558.165 kb on - strand at 558.165 kb on - strand at 558.190 kb on + strand at 558.190 kb on + strand at 558.190 kb on + strand at 558.190 kb on + strand at 558.190 kb on + strand at 558.191 kb on - strand at 558.191 kb on - strand at 558.191 kb on - strand at 558.201 kb on + strand at 558.201 kb on + strand at 558.202 kb on - strand at 558.208 kb on - strand at 558.254 kb on - strand at 558.271 kb on - strand at 558.422 kb on - strand, within PS417_02435 at 558.446 kb on - strand, within PS417_02435 at 558.571 kb on + strand, within PS417_02435 at 558.571 kb on + strand, within PS417_02435 at 558.571 kb on + strand, within PS417_02435 at 558.572 kb on - strand, within PS417_02435 at 558.583 kb on + strand, within PS417_02435 at 558.583 kb on + strand, within PS417_02435 at 558.712 kb on - strand, within PS417_02435 at 558.740 kb on + strand, within PS417_02435 at 558.914 kb on - strand, within PS417_02435
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 555,622 - +0.9 555,683 - -0.9 555,683 - -0.1 555,724 + PS417_02425 0.12 +1.0 555,725 - PS417_02425 0.12 -0.3 555,986 - PS417_02425 0.44 +0.1 556,115 - PS417_02425 0.60 +0.6 556,193 - PS417_02425 0.69 -0.1 556,193 - PS417_02425 0.69 -0.0 556,193 - PS417_02425 0.69 +0.2 556,557 - +0.5 556,775 + PS417_02430 0.18 +0.8 556,776 - PS417_02430 0.18 +1.0 556,778 + PS417_02430 0.18 +0.7 556,779 - PS417_02430 0.18 -0.3 556,779 - PS417_02430 0.18 +2.6 556,973 + PS417_02430 0.31 +1.2 557,049 + PS417_02430 0.36 +1.5 557,049 + PS417_02430 0.36 -0.2 557,049 + PS417_02430 0.36 +0.4 557,050 - +1.0 557,885 + -0.0 557,961 + -1.2 557,961 + -0.0 557,962 - +1.4 557,962 - +0.5 558,110 + -0.7 558,111 - -0.8 558,136 + -1.6 558,136 + -0.5 558,137 - -1.2 558,137 - +0.0 558,156 - +2.3 558,164 + +0.4 558,164 + +0.1 558,164 + +0.2 558,165 - -1.1 558,165 - -0.9 558,190 + -0.5 558,190 + +0.6 558,190 + -1.0 558,190 + +0.6 558,190 + +0.6 558,191 - +0.0 558,191 - -1.0 558,191 - +2.7 558,201 + +0.6 558,201 + -0.4 558,202 - -0.9 558,208 - -1.0 558,254 - -0.4 558,271 - -1.0 558,422 - PS417_02435 0.26 -0.6 558,446 - PS417_02435 0.29 -0.6 558,571 + PS417_02435 0.43 -0.6 558,571 + PS417_02435 0.43 -1.0 558,571 + PS417_02435 0.43 -0.0 558,572 - PS417_02435 0.43 -0.1 558,583 + PS417_02435 0.45 -0.3 558,583 + PS417_02435 0.45 -0.6 558,712 - PS417_02435 0.60 +1.1 558,740 + PS417_02435 0.63 -1.5 558,914 - PS417_02435 0.84 -0.0
Or see this region's nucleotide sequence