Experiment: Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_23995 and PS417_24000 are separated by 4 nucleotides PS417_24000 and PS417_24005 are separated by 66 nucleotides PS417_24005 and PS417_24010 are separated by 16 nucleotides PS417_24010 and PS417_24015 are separated by 8 nucleotides
PS417_23995: PS417_23995 - preprotein translocase subunit SecG, at 5,195,421 to 5,195,804
_23995
PS417_24000: PS417_24000 - triosephosphate isomerase, at 5,195,809 to 5,196,564
_24000
PS417_24005: PS417_24005 - phosphoglucosamine mutase, at 5,196,631 to 5,197,968
_24005
PS417_24010: PS417_24010 - dihydropteroate synthase, at 5,197,985 to 5,198,836
_24010
PS417_24015: PS417_24015 - ATP-dependent metalloprotease, at 5,198,845 to 5,200,755
_24015
Position (kb) 5196
5197
5198 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 5195.682 kb on - strand, within PS417_23995 at 5196.649 kb on + strand at 5197.969 kb on - strand at 5197.969 kb on - strand at 5197.969 kb on - strand at 5197.969 kb on - strand at 5198.847 kb on - strand at 5198.847 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 5,195,682 - PS417_23995 0.68 -2.9 5,196,649 + -0.1 5,197,969 - -0.1 5,197,969 - -0.1 5,197,969 - -0.1 5,197,969 - -1.4 5,198,847 - +0.1 5,198,847 - -1.2
Or see this region's nucleotide sequence