Experiment: Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_23675 and PS417_23680 are separated by 133 nucleotides PS417_23680 and PS417_23685 are separated by 312 nucleotides
PS417_23675: PS417_23675 - transcriptional regulator, at 5,119,102 to 5,119,977
_23675
PS417_23680: PS417_23680 - AraC family transcriptional regulator, at 5,120,111 to 5,121,091
_23680
PS417_23685: PS417_23685 - anthranilate 1,2-dioxygenase (deaminating, decarboxylating) large subunit [EC: 1.14.12.1] <small>(from data)</small>, at 5,121,404 to 5,122,795
_23685
Position (kb) 5120
5121
5122 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5119.292 kb on - strand, within PS417_23675 at 5119.405 kb on + strand, within PS417_23675 at 5119.406 kb on - strand, within PS417_23675 at 5119.406 kb on - strand, within PS417_23675 at 5119.678 kb on + strand, within PS417_23675 at 5119.703 kb on - strand, within PS417_23675 at 5119.715 kb on + strand, within PS417_23675 at 5119.715 kb on + strand, within PS417_23675 at 5119.715 kb on + strand, within PS417_23675 at 5119.715 kb on + strand, within PS417_23675 at 5120.034 kb on + strand at 5120.035 kb on - strand at 5120.035 kb on - strand at 5120.048 kb on + strand at 5120.063 kb on - strand at 5120.117 kb on - strand at 5120.117 kb on - strand at 5120.298 kb on + strand, within PS417_23680 at 5120.419 kb on - strand, within PS417_23680 at 5120.419 kb on - strand, within PS417_23680 at 5120.419 kb on - strand, within PS417_23680 at 5120.419 kb on - strand, within PS417_23680 at 5120.439 kb on + strand, within PS417_23680 at 5120.440 kb on - strand, within PS417_23680 at 5120.559 kb on + strand, within PS417_23680 at 5120.560 kb on - strand, within PS417_23680 at 5120.560 kb on - strand at 5120.595 kb on + strand, within PS417_23680 at 5120.595 kb on + strand, within PS417_23680 at 5120.875 kb on - strand, within PS417_23680 at 5121.160 kb on + strand at 5121.161 kb on - strand at 5121.210 kb on + strand at 5121.363 kb on + strand at 5121.443 kb on - strand at 5121.563 kb on + strand, within PS417_23685 at 5121.564 kb on - strand, within PS417_23685 at 5121.764 kb on + strand, within PS417_23685 at 5121.764 kb on + strand, within PS417_23685 at 5121.764 kb on + strand, within PS417_23685 at 5121.764 kb on + strand, within PS417_23685 at 5121.765 kb on - strand, within PS417_23685 at 5121.866 kb on + strand, within PS417_23685 at 5121.866 kb on + strand, within PS417_23685 at 5121.866 kb on + strand, within PS417_23685 at 5121.867 kb on - strand, within PS417_23685 at 5121.867 kb on - strand, within PS417_23685 at 5122.010 kb on + strand, within PS417_23685 at 5122.010 kb on + strand, within PS417_23685 at 5122.017 kb on - strand, within PS417_23685 at 5122.036 kb on - strand, within PS417_23685 at 5122.082 kb on + strand, within PS417_23685 at 5122.088 kb on + strand, within PS417_23685 at 5122.088 kb on + strand, within PS417_23685 at 5122.089 kb on - strand at 5122.089 kb on - strand, within PS417_23685
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 5,119,292 - PS417_23675 0.22 +0.2 5,119,405 + PS417_23675 0.35 +0.3 5,119,406 - PS417_23675 0.35 -0.6 5,119,406 - PS417_23675 0.35 +0.0 5,119,678 + PS417_23675 0.66 +0.6 5,119,703 - PS417_23675 0.69 -0.1 5,119,715 + PS417_23675 0.70 -0.1 5,119,715 + PS417_23675 0.70 -0.4 5,119,715 + PS417_23675 0.70 +0.4 5,119,715 + PS417_23675 0.70 -2.4 5,120,034 + +1.2 5,120,035 - -0.1 5,120,035 - -1.1 5,120,048 + +0.0 5,120,063 - +1.7 5,120,117 - +0.4 5,120,117 - -0.5 5,120,298 + PS417_23680 0.19 -0.1 5,120,419 - PS417_23680 0.31 -0.5 5,120,419 - PS417_23680 0.31 +1.3 5,120,419 - PS417_23680 0.31 +1.7 5,120,419 - PS417_23680 0.31 +0.4 5,120,439 + PS417_23680 0.33 +1.7 5,120,440 - PS417_23680 0.34 +0.4 5,120,559 + PS417_23680 0.46 -0.3 5,120,560 - PS417_23680 0.46 -3.1 5,120,560 - +0.9 5,120,595 + PS417_23680 0.49 +0.9 5,120,595 + PS417_23680 0.49 +1.5 5,120,875 - PS417_23680 0.78 +0.5 5,121,160 + -0.3 5,121,161 - -0.1 5,121,210 + -0.3 5,121,363 + +0.5 5,121,443 - +0.3 5,121,563 + PS417_23685 0.11 +1.1 5,121,564 - PS417_23685 0.11 -0.2 5,121,764 + PS417_23685 0.26 +0.4 5,121,764 + PS417_23685 0.26 -0.6 5,121,764 + PS417_23685 0.26 +0.9 5,121,764 + PS417_23685 0.26 +0.2 5,121,765 - PS417_23685 0.26 +0.9 5,121,866 + PS417_23685 0.33 -0.5 5,121,866 + PS417_23685 0.33 +1.0 5,121,866 + PS417_23685 0.33 +0.2 5,121,867 - PS417_23685 0.33 -0.6 5,121,867 - PS417_23685 0.33 +0.3 5,122,010 + PS417_23685 0.44 -0.6 5,122,010 + PS417_23685 0.44 +3.4 5,122,017 - PS417_23685 0.44 -1.4 5,122,036 - PS417_23685 0.45 +0.6 5,122,082 + PS417_23685 0.49 -0.1 5,122,088 + PS417_23685 0.49 -0.1 5,122,088 + PS417_23685 0.49 -0.3 5,122,089 - -0.6 5,122,089 - PS417_23685 0.49 -1.3
Or see this region's nucleotide sequence