Experiment: Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_23340 and PS417_23345 are separated by 12 nucleotides PS417_23345 and PS417_23350 are separated by 147 nucleotides
PS417_23340: PS417_23340 - diguanylate cyclase, at 5,052,278 to 5,053,291
_23340
PS417_23345: PS417_23345 - amino acid ABC transporter substrate-binding protein, at 5,053,304 to 5,054,332
_23345
PS417_23350: PS417_23350 - LysR family transcriptional regulator, at 5,054,480 to 5,055,376
_23350
Position (kb) 5053
5054
5055 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 5052.425 kb on + strand, within PS417_23340 at 5052.490 kb on - strand, within PS417_23340 at 5052.533 kb on + strand at 5052.533 kb on + strand, within PS417_23340 at 5052.534 kb on - strand, within PS417_23340 at 5052.596 kb on + strand, within PS417_23340 at 5052.596 kb on + strand, within PS417_23340 at 5052.681 kb on + strand, within PS417_23340 at 5052.681 kb on + strand, within PS417_23340 at 5052.681 kb on + strand, within PS417_23340 at 5052.681 kb on + strand, within PS417_23340 at 5052.682 kb on - strand, within PS417_23340 at 5053.251 kb on - strand at 5053.354 kb on + strand at 5053.355 kb on - strand at 5053.416 kb on + strand, within PS417_23345 at 5053.417 kb on - strand, within PS417_23345 at 5053.603 kb on + strand, within PS417_23345 at 5053.604 kb on - strand, within PS417_23345 at 5053.723 kb on - strand, within PS417_23345 at 5053.816 kb on - strand, within PS417_23345 at 5053.816 kb on - strand, within PS417_23345 at 5053.816 kb on - strand, within PS417_23345 at 5053.840 kb on - strand, within PS417_23345 at 5054.388 kb on + strand at 5054.388 kb on + strand at 5054.389 kb on - strand at 5054.390 kb on + strand at 5054.406 kb on + strand at 5054.407 kb on - strand at 5054.663 kb on + strand, within PS417_23350 at 5054.663 kb on + strand, within PS417_23350 at 5054.664 kb on - strand at 5054.664 kb on - strand, within PS417_23350 at 5054.664 kb on - strand, within PS417_23350 at 5054.664 kb on - strand, within PS417_23350 at 5054.687 kb on + strand, within PS417_23350 at 5054.687 kb on + strand, within PS417_23350 at 5054.705 kb on - strand, within PS417_23350 at 5054.705 kb on - strand, within PS417_23350 at 5054.738 kb on + strand, within PS417_23350 at 5054.739 kb on - strand, within PS417_23350 at 5054.739 kb on - strand, within PS417_23350 at 5054.841 kb on + strand, within PS417_23350 at 5054.841 kb on + strand, within PS417_23350 at 5054.842 kb on - strand, within PS417_23350 at 5054.842 kb on - strand, within PS417_23350 at 5054.842 kb on - strand, within PS417_23350 at 5054.842 kb on - strand, within PS417_23350 at 5055.117 kb on - strand, within PS417_23350 at 5055.143 kb on + strand, within PS417_23350 at 5055.143 kb on + strand, within PS417_23350 at 5055.143 kb on + strand, within PS417_23350 at 5055.143 kb on + strand, within PS417_23350 at 5055.143 kb on + strand, within PS417_23350 at 5055.144 kb on - strand, within PS417_23350 at 5055.144 kb on - strand, within PS417_23350 at 5055.144 kb on - strand, within PS417_23350 at 5055.198 kb on - strand, within PS417_23350 at 5055.249 kb on - strand, within PS417_23350
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 5,052,425 + PS417_23340 0.14 +1.4 5,052,490 - PS417_23340 0.21 +0.2 5,052,533 + +0.9 5,052,533 + PS417_23340 0.25 +0.6 5,052,534 - PS417_23340 0.25 +0.0 5,052,596 + PS417_23340 0.31 +0.1 5,052,596 + PS417_23340 0.31 +0.8 5,052,681 + PS417_23340 0.40 -0.4 5,052,681 + PS417_23340 0.40 -0.5 5,052,681 + PS417_23340 0.40 +0.2 5,052,681 + PS417_23340 0.40 -1.2 5,052,682 - PS417_23340 0.40 +0.5 5,053,251 - -0.7 5,053,354 + -0.0 5,053,355 - -0.6 5,053,416 + PS417_23345 0.11 +0.1 5,053,417 - PS417_23345 0.11 -2.1 5,053,603 + PS417_23345 0.29 +0.7 5,053,604 - PS417_23345 0.29 -1.2 5,053,723 - PS417_23345 0.41 -0.8 5,053,816 - PS417_23345 0.50 -0.5 5,053,816 - PS417_23345 0.50 -0.1 5,053,816 - PS417_23345 0.50 +0.2 5,053,840 - PS417_23345 0.52 -0.6 5,054,388 + +0.4 5,054,388 + +0.7 5,054,389 - -0.1 5,054,390 + -0.1 5,054,406 + -0.1 5,054,407 - -0.5 5,054,663 + PS417_23350 0.20 -0.6 5,054,663 + PS417_23350 0.20 +0.0 5,054,664 - +0.9 5,054,664 - PS417_23350 0.21 +0.3 5,054,664 - PS417_23350 0.21 -0.6 5,054,664 - PS417_23350 0.21 +0.7 5,054,687 + PS417_23350 0.23 +0.5 5,054,687 + PS417_23350 0.23 -0.9 5,054,705 - PS417_23350 0.25 +0.2 5,054,705 - PS417_23350 0.25 -0.2 5,054,738 + PS417_23350 0.29 +0.8 5,054,739 - PS417_23350 0.29 +0.4 5,054,739 - PS417_23350 0.29 +0.6 5,054,841 + PS417_23350 0.40 +0.1 5,054,841 + PS417_23350 0.40 +0.2 5,054,842 - PS417_23350 0.40 +5.6 5,054,842 - PS417_23350 0.40 +0.2 5,054,842 - PS417_23350 0.40 +0.1 5,054,842 - PS417_23350 0.40 +0.5 5,055,117 - PS417_23350 0.71 +0.2 5,055,143 + PS417_23350 0.74 -1.3 5,055,143 + PS417_23350 0.74 +1.1 5,055,143 + PS417_23350 0.74 +0.6 5,055,143 + PS417_23350 0.74 +0.7 5,055,143 + PS417_23350 0.74 -1.6 5,055,144 - PS417_23350 0.74 +0.2 5,055,144 - PS417_23350 0.74 -0.6 5,055,144 - PS417_23350 0.74 -1.6 5,055,198 - PS417_23350 0.80 +0.4 5,055,249 - PS417_23350 0.86 +1.3
Or see this region's nucleotide sequence