Experiment: Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_01675 and PS417_01680 are separated by 200 nucleotides PS417_01680 and PS417_01685 overlap by 1 nucleotides
PS417_01675: PS417_01675 - maltodextrin phosphorylase, at 368,200 to 370,650
_01675
PS417_01680: PS417_01680 - membrane protein, at 370,851 to 373,922
_01680
PS417_01685: PS417_01685 - membrane protein, at 373,922 to 375,277
_01685
Position (kb) 370
371
372
373
374 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 369.865 kb on - strand, within PS417_01675 at 369.875 kb on - strand, within PS417_01675 at 370.099 kb on + strand, within PS417_01675 at 370.284 kb on + strand, within PS417_01675 at 370.668 kb on - strand at 370.668 kb on - strand at 370.729 kb on + strand at 370.804 kb on + strand at 370.804 kb on + strand at 370.804 kb on + strand at 370.805 kb on - strand at 370.805 kb on - strand at 370.807 kb on + strand at 370.807 kb on + strand at 370.808 kb on - strand at 370.808 kb on - strand at 370.808 kb on - strand at 370.838 kb on - strand at 371.484 kb on - strand, within PS417_01680 at 371.526 kb on + strand at 371.527 kb on - strand, within PS417_01680 at 371.733 kb on + strand, within PS417_01680 at 371.733 kb on + strand, within PS417_01680 at 371.734 kb on - strand at 371.853 kb on + strand, within PS417_01680 at 371.910 kb on + strand, within PS417_01680 at 371.910 kb on + strand, within PS417_01680 at 371.910 kb on + strand, within PS417_01680 at 371.911 kb on - strand, within PS417_01680 at 371.943 kb on - strand, within PS417_01680 at 372.021 kb on + strand, within PS417_01680 at 372.021 kb on + strand, within PS417_01680 at 372.021 kb on + strand, within PS417_01680 at 372.021 kb on + strand, within PS417_01680 at 372.021 kb on + strand, within PS417_01680 at 372.040 kb on + strand, within PS417_01680 at 372.040 kb on + strand, within PS417_01680 at 372.041 kb on - strand, within PS417_01680 at 372.086 kb on - strand, within PS417_01680 at 372.138 kb on + strand, within PS417_01680 at 372.139 kb on - strand, within PS417_01680 at 372.139 kb on - strand, within PS417_01680 at 372.139 kb on - strand, within PS417_01680 at 372.195 kb on + strand, within PS417_01680 at 372.307 kb on + strand, within PS417_01680 at 372.308 kb on - strand, within PS417_01680 at 372.343 kb on + strand, within PS417_01680 at 372.343 kb on + strand, within PS417_01680 at 372.472 kb on + strand, within PS417_01680 at 372.472 kb on + strand, within PS417_01680 at 372.472 kb on + strand, within PS417_01680 at 372.473 kb on - strand, within PS417_01680 at 373.033 kb on - strand, within PS417_01680 at 373.033 kb on - strand, within PS417_01680 at 373.151 kb on - strand, within PS417_01680 at 373.269 kb on + strand, within PS417_01680 at 373.428 kb on + strand, within PS417_01680 at 373.429 kb on - strand, within PS417_01680 at 373.429 kb on - strand, within PS417_01680 at 373.486 kb on - strand, within PS417_01680 at 373.869 kb on + strand at 373.870 kb on - strand at 374.048 kb on - strand at 374.142 kb on - strand, within PS417_01685 at 374.142 kb on - strand, within PS417_01685 at 374.214 kb on - strand, within PS417_01685
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 369,865 - PS417_01675 0.68 -1.0 369,875 - PS417_01675 0.68 -1.4 370,099 + PS417_01675 0.77 +0.4 370,284 + PS417_01675 0.85 -0.1 370,668 - +0.4 370,668 - -2.6 370,729 + +0.3 370,804 + -1.0 370,804 + -1.6 370,804 + -0.3 370,805 - +1.2 370,805 - +0.6 370,807 + -0.0 370,807 + -1.2 370,808 - +1.7 370,808 - -1.3 370,808 - +0.5 370,838 - -0.0 371,484 - PS417_01680 0.21 -0.0 371,526 + +1.0 371,527 - PS417_01680 0.22 -0.9 371,733 + PS417_01680 0.29 +0.5 371,733 + PS417_01680 0.29 -0.0 371,734 - +1.0 371,853 + PS417_01680 0.33 +0.4 371,910 + PS417_01680 0.34 -0.2 371,910 + PS417_01680 0.34 -0.2 371,910 + PS417_01680 0.34 -1.0 371,911 - PS417_01680 0.35 +1.0 371,943 - PS417_01680 0.36 -1.3 372,021 + PS417_01680 0.38 +2.7 372,021 + PS417_01680 0.38 +0.3 372,021 + PS417_01680 0.38 +0.6 372,021 + PS417_01680 0.38 +0.2 372,021 + PS417_01680 0.38 -0.8 372,040 + PS417_01680 0.39 -0.7 372,040 + PS417_01680 0.39 -1.1 372,041 - PS417_01680 0.39 -0.5 372,086 - PS417_01680 0.40 +3.3 372,138 + PS417_01680 0.42 -0.2 372,139 - PS417_01680 0.42 +0.2 372,139 - PS417_01680 0.42 +2.1 372,139 - PS417_01680 0.42 +1.0 372,195 + PS417_01680 0.44 -1.5 372,307 + PS417_01680 0.47 +0.1 372,308 - PS417_01680 0.47 +0.3 372,343 + PS417_01680 0.49 -1.0 372,343 + PS417_01680 0.49 +0.4 372,472 + PS417_01680 0.53 -0.0 372,472 + PS417_01680 0.53 -0.8 372,472 + PS417_01680 0.53 +0.4 372,473 - PS417_01680 0.53 +4.0 373,033 - PS417_01680 0.71 +0.4 373,033 - PS417_01680 0.71 +1.1 373,151 - PS417_01680 0.75 -0.4 373,269 + PS417_01680 0.79 -0.4 373,428 + PS417_01680 0.84 -2.6 373,429 - PS417_01680 0.84 +0.1 373,429 - PS417_01680 0.84 +0.8 373,486 - PS417_01680 0.86 +0.1 373,869 + +1.3 373,870 - +0.0 374,048 - +1.1 374,142 - PS417_01685 0.16 +1.8 374,142 - PS417_01685 0.16 -1.9 374,214 - PS417_01685 0.22 -2.4
Or see this region's nucleotide sequence