Experiment: Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_00155 and PS417_00160 are separated by 1 nucleotides PS417_00160 and PS417_00165 are separated by 48 nucleotides
PS417_00155: PS417_00155 - 2-dehydro-3-deoxygalactonokinase, at 32,977 to 33,936
_00155
PS417_00160: PS417_00160 - 2-dehydro-3-deoxy-6-phosphogalactonate aldolase, at 33,938 to 34,558
_00160
PS417_00165: PS417_00165 - galactonate dehydratase, at 34,607 to 35,755
_00165
Position (kb) 33
34
35 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 32.940 kb on + strand at 32.942 kb on + strand at 33.028 kb on + strand at 33.028 kb on + strand at 33.029 kb on - strand at 33.030 kb on + strand at 33.297 kb on + strand, within PS417_00155 at 33.298 kb on - strand, within PS417_00155 at 33.483 kb on + strand, within PS417_00155 at 33.499 kb on - strand, within PS417_00155 at 33.713 kb on - strand, within PS417_00155 at 34.080 kb on - strand at 34.426 kb on + strand, within PS417_00160 at 34.427 kb on - strand, within PS417_00160 at 34.427 kb on - strand, within PS417_00160 at 34.427 kb on - strand, within PS417_00160 at 34.492 kb on + strand, within PS417_00160 at 34.529 kb on + strand at 34.530 kb on - strand at 34.530 kb on - strand at 34.591 kb on - strand at 34.591 kb on - strand at 34.591 kb on - strand at 34.592 kb on + strand at 34.602 kb on - strand at 34.758 kb on - strand, within PS417_00165 at 34.955 kb on + strand, within PS417_00165 at 35.213 kb on + strand, within PS417_00165 at 35.213 kb on + strand, within PS417_00165 at 35.213 kb on + strand, within PS417_00165 at 35.214 kb on - strand, within PS417_00165 at 35.214 kb on - strand, within PS417_00165 at 35.357 kb on + strand, within PS417_00165 at 35.438 kb on + strand, within PS417_00165 at 35.516 kb on + strand, within PS417_00165 at 35.517 kb on - strand, within PS417_00165 at 35.517 kb on - strand, within PS417_00165 at 35.517 kb on - strand, within PS417_00165
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 32,940 + +0.4 32,942 + +1.5 33,028 + +2.5 33,028 + -0.5 33,029 - -1.0 33,030 + -0.1 33,297 + PS417_00155 0.33 -0.1 33,298 - PS417_00155 0.33 -1.9 33,483 + PS417_00155 0.53 -1.1 33,499 - PS417_00155 0.54 -0.8 33,713 - PS417_00155 0.77 -1.0 34,080 - -0.1 34,426 + PS417_00160 0.79 -1.4 34,427 - PS417_00160 0.79 +0.6 34,427 - PS417_00160 0.79 -0.6 34,427 - PS417_00160 0.79 -1.0 34,492 + PS417_00160 0.89 -0.1 34,529 + -2.8 34,530 - -0.7 34,530 - -1.1 34,591 - -0.1 34,591 - +0.5 34,591 - +1.5 34,592 + +0.2 34,602 - -0.1 34,758 - PS417_00165 0.13 -0.0 34,955 + PS417_00165 0.30 -0.1 35,213 + PS417_00165 0.53 -1.8 35,213 + PS417_00165 0.53 +0.9 35,213 + PS417_00165 0.53 +0.2 35,214 - PS417_00165 0.53 +0.3 35,214 - PS417_00165 0.53 +0.9 35,357 + PS417_00165 0.65 -2.4 35,438 + PS417_00165 0.72 -0.3 35,516 + PS417_00165 0.79 -1.1 35,517 - PS417_00165 0.79 -1.4 35,517 - PS417_00165 0.79 -1.0 35,517 - PS417_00165 0.79 -0.1
Or see this region's nucleotide sequence