Experiment: Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_26200 and PS417_26205 are separated by 90 nucleotides PS417_26205 and PS417_26210 are separated by 176 nucleotides PS417_26210 and PS417_26215 are separated by 195 nucleotides
PS417_26200: PS417_26200 - conjugal transfer protein TraX, at 5,662,165 to 5,662,893
_26200
PS417_26205: PS417_26205 - threonine aldolase, at 5,662,984 to 5,664,024
_26205
PS417_26210: PS417_26210 - hypothetical protein, at 5,664,201 to 5,664,398
_26210
PS417_26215: PS417_26215 - ferredoxin, at 5,664,594 to 5,665,694
_26215
Position (kb) 5662
5663
5664
5665 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5661.990 kb on - strand at 5662.113 kb on + strand at 5662.114 kb on - strand at 5662.224 kb on - strand at 5662.344 kb on + strand, within PS417_26200 at 5662.345 kb on - strand, within PS417_26200 at 5662.349 kb on + strand, within PS417_26200 at 5662.404 kb on - strand, within PS417_26200 at 5662.447 kb on + strand, within PS417_26200 at 5662.447 kb on + strand, within PS417_26200 at 5662.447 kb on + strand, within PS417_26200 at 5662.448 kb on - strand, within PS417_26200 at 5662.448 kb on - strand, within PS417_26200 at 5662.448 kb on - strand, within PS417_26200 at 5662.517 kb on - strand, within PS417_26200 at 5662.612 kb on - strand, within PS417_26200 at 5662.667 kb on + strand, within PS417_26200 at 5662.763 kb on + strand, within PS417_26200 at 5662.763 kb on + strand, within PS417_26200 at 5662.763 kb on + strand, within PS417_26200 at 5662.764 kb on - strand, within PS417_26200 at 5662.791 kb on - strand, within PS417_26200 at 5662.894 kb on - strand at 5662.948 kb on + strand at 5663.020 kb on + strand at 5663.021 kb on - strand at 5663.021 kb on - strand at 5663.219 kb on - strand, within PS417_26205 at 5663.438 kb on - strand, within PS417_26205 at 5663.438 kb on - strand, within PS417_26205 at 5663.438 kb on - strand, within PS417_26205 at 5663.646 kb on + strand, within PS417_26205 at 5663.646 kb on + strand, within PS417_26205 at 5663.647 kb on - strand, within PS417_26205 at 5663.918 kb on - strand, within PS417_26205 at 5663.982 kb on - strand at 5664.080 kb on - strand at 5664.080 kb on - strand at 5664.083 kb on + strand at 5664.216 kb on + strand at 5664.372 kb on + strand, within PS417_26210 at 5664.484 kb on + strand at 5664.644 kb on + strand at 5664.645 kb on - strand at 5664.647 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 5,661,990 - +0.4 5,662,113 + +0.5 5,662,114 - -0.4 5,662,224 - -0.3 5,662,344 + PS417_26200 0.25 +0.7 5,662,345 - PS417_26200 0.25 +0.2 5,662,349 + PS417_26200 0.25 -2.1 5,662,404 - PS417_26200 0.33 -0.5 5,662,447 + PS417_26200 0.39 -0.2 5,662,447 + PS417_26200 0.39 +0.2 5,662,447 + PS417_26200 0.39 +0.5 5,662,448 - PS417_26200 0.39 +0.3 5,662,448 - PS417_26200 0.39 -0.6 5,662,448 - PS417_26200 0.39 +0.4 5,662,517 - PS417_26200 0.48 -0.5 5,662,612 - PS417_26200 0.61 -0.3 5,662,667 + PS417_26200 0.69 -0.4 5,662,763 + PS417_26200 0.82 +1.0 5,662,763 + PS417_26200 0.82 +2.0 5,662,763 + PS417_26200 0.82 +0.4 5,662,764 - PS417_26200 0.82 +2.3 5,662,791 - PS417_26200 0.86 -0.1 5,662,894 - -0.6 5,662,948 + +0.1 5,663,020 + +0.7 5,663,021 - +1.6 5,663,021 - -0.5 5,663,219 - PS417_26205 0.23 -0.3 5,663,438 - PS417_26205 0.44 +0.0 5,663,438 - PS417_26205 0.44 -1.8 5,663,438 - PS417_26205 0.44 -0.1 5,663,646 + PS417_26205 0.64 -0.1 5,663,646 + PS417_26205 0.64 -1.0 5,663,647 - PS417_26205 0.64 -1.5 5,663,918 - PS417_26205 0.90 +0.7 5,663,982 - +0.3 5,664,080 - -1.4 5,664,080 - +0.7 5,664,083 + -0.1 5,664,216 + -1.0 5,664,372 + PS417_26210 0.86 +1.5 5,664,484 + +0.2 5,664,644 + -1.0 5,664,645 - +1.5 5,664,647 - +0.5
Or see this region's nucleotide sequence