Strain Fitness in Pseudomonas simiae WCS417 around PS417_24755

Experiment: Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_24750 and PS417_24755 are separated by 145 nucleotidesPS417_24755 and PS417_24760 overlap by 4 nucleotidesPS417_24760 and PS417_24765 are separated by 21 nucleotides PS417_24750: PS417_24750 - 3-methyladenine DNA glycosylase, at 5,369,247 to 5,369,930 _24750 PS417_24755: PS417_24755 - phosphoesterase, at 5,370,076 to 5,371,392 _24755 PS417_24760: PS417_24760 - ATP-dependent protease, at 5,371,389 to 5,371,979 _24760 PS417_24765: PS417_24765 - membrane protein, at 5,372,001 to 5,372,717 _24765 Position (kb) 5370 5371 5372Strain fitness (log2 ratio) -2 -1 0 1 2at 5369.110 kb on - strandat 5369.110 kb on - strandat 5369.110 kb on - strandat 5369.112 kb on - strandat 5369.112 kb on - strandat 5369.112 kb on - strandat 5369.112 kb on - strandat 5369.112 kb on - strandat 5369.168 kb on - strandat 5369.193 kb on - strandat 5369.208 kb on - strandat 5369.224 kb on + strandat 5369.225 kb on - strandat 5369.403 kb on + strand, within PS417_24750at 5369.407 kb on - strand, within PS417_24750at 5369.407 kb on - strand, within PS417_24750at 5369.443 kb on - strand, within PS417_24750at 5369.483 kb on + strand, within PS417_24750at 5369.484 kb on - strand, within PS417_24750at 5369.484 kb on - strand, within PS417_24750at 5369.487 kb on + strand, within PS417_24750at 5369.487 kb on + strand, within PS417_24750at 5369.487 kb on + strand, within PS417_24750at 5369.487 kb on + strand, within PS417_24750at 5369.488 kb on - strand, within PS417_24750at 5369.488 kb on - strand, within PS417_24750at 5369.488 kb on - strand, within PS417_24750at 5369.488 kb on - strand, within PS417_24750at 5369.488 kb on - strand, within PS417_24750at 5369.488 kb on - strand, within PS417_24750at 5369.488 kb on - strand, within PS417_24750at 5369.488 kb on - strand, within PS417_24750at 5369.493 kb on + strand, within PS417_24750at 5369.494 kb on - strand, within PS417_24750at 5369.494 kb on - strand, within PS417_24750at 5369.494 kb on - strand, within PS417_24750at 5369.494 kb on - strand, within PS417_24750at 5369.496 kb on + strand, within PS417_24750at 5369.497 kb on - strand, within PS417_24750at 5369.751 kb on + strand, within PS417_24750at 5369.751 kb on + strand, within PS417_24750at 5369.752 kb on - strand, within PS417_24750at 5369.752 kb on - strand, within PS417_24750at 5369.932 kb on - strandat 5369.935 kb on + strandat 5369.935 kb on + strandat 5369.936 kb on - strandat 5369.936 kb on - strandat 5369.936 kb on - strandat 5369.936 kb on - strandat 5369.936 kb on - strandat 5370.076 kb on - strandat 5370.076 kb on - strandat 5370.307 kb on + strand, within PS417_24755at 5370.307 kb on + strand, within PS417_24755at 5370.307 kb on + strand, within PS417_24755at 5370.308 kb on - strand, within PS417_24755at 5370.308 kb on - strand, within PS417_24755at 5370.395 kb on - strand, within PS417_24755at 5370.395 kb on - strand, within PS417_24755at 5370.406 kb on + strand, within PS417_24755at 5370.407 kb on - strand, within PS417_24755at 5370.456 kb on + strand, within PS417_24755at 5370.547 kb on + strand, within PS417_24755at 5370.548 kb on - strand, within PS417_24755at 5370.698 kb on + strand, within PS417_24755at 5370.741 kb on + strand, within PS417_24755at 5370.899 kb on + strand, within PS417_24755at 5370.900 kb on - strand, within PS417_24755at 5371.382 kb on - strandat 5371.387 kb on + strandat 5371.387 kb on + strandat 5371.388 kb on - strandat 5371.388 kb on - strandat 5371.391 kb on - strandat 5371.391 kb on - strandat 5371.391 kb on - strandat 5371.507 kb on + strand, within PS417_24760at 5371.980 kb on - strandat 5371.980 kb on - strandat 5372.003 kb on - strandat 5372.173 kb on - strand, within PS417_24765at 5372.191 kb on + strand, within PS417_24765

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
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5,369,110 - +2.0
5,369,110 - -0.0
5,369,110 - -0.0
5,369,112 - +0.3
5,369,112 - +1.2
5,369,112 - +0.8
5,369,112 - +0.8
5,369,112 - +1.2
5,369,168 - -0.4
5,369,193 - +0.6
5,369,208 - -0.2
5,369,224 + -0.6
5,369,225 - -0.1
5,369,403 + PS417_24750 0.23 -1.0
5,369,407 - PS417_24750 0.23 +0.4
5,369,407 - PS417_24750 0.23 +0.2
5,369,443 - PS417_24750 0.29 -0.6
5,369,483 + PS417_24750 0.35 +0.5
5,369,484 - PS417_24750 0.35 +0.3
5,369,484 - PS417_24750 0.35 -0.2
5,369,487 + PS417_24750 0.35 +0.0
5,369,487 + PS417_24750 0.35 -0.6
5,369,487 + PS417_24750 0.35 -0.6
5,369,487 + PS417_24750 0.35 -1.5
5,369,488 - PS417_24750 0.35 +0.1
5,369,488 - PS417_24750 0.35 -0.2
5,369,488 - PS417_24750 0.35 +1.3
5,369,488 - PS417_24750 0.35 +0.6
5,369,488 - PS417_24750 0.35 +1.2
5,369,488 - PS417_24750 0.35 +0.1
5,369,488 - PS417_24750 0.35 -0.7
5,369,488 - PS417_24750 0.35 -1.0
5,369,493 + PS417_24750 0.36 -0.0
5,369,494 - PS417_24750 0.36 +1.3
5,369,494 - PS417_24750 0.36 -2.2
5,369,494 - PS417_24750 0.36 -0.0
5,369,494 - PS417_24750 0.36 +0.5
5,369,496 + PS417_24750 0.36 -1.4
5,369,497 - PS417_24750 0.37 +1.8
5,369,751 + PS417_24750 0.74 -0.5
5,369,751 + PS417_24750 0.74 -0.2
5,369,752 - PS417_24750 0.74 -0.6
5,369,752 - PS417_24750 0.74 -0.6
5,369,932 - +1.4
5,369,935 + -2.0
5,369,935 + +1.0
5,369,936 - -0.2
5,369,936 - -0.0
5,369,936 - -1.0
5,369,936 - +0.2
5,369,936 - -0.3
5,370,076 - +0.5
5,370,076 - -1.0
5,370,307 + PS417_24755 0.18 +1.0
5,370,307 + PS417_24755 0.18 +1.8
5,370,307 + PS417_24755 0.18 +0.0
5,370,308 - PS417_24755 0.18 +0.4
5,370,308 - PS417_24755 0.18 +0.7
5,370,395 - PS417_24755 0.24 +1.0
5,370,395 - PS417_24755 0.24 +0.4
5,370,406 + PS417_24755 0.25 +1.0
5,370,407 - PS417_24755 0.25 +0.7
5,370,456 + PS417_24755 0.29 -0.1
5,370,547 + PS417_24755 0.36 +1.5
5,370,548 - PS417_24755 0.36 +0.2
5,370,698 + PS417_24755 0.47 +0.3
5,370,741 + PS417_24755 0.50 +0.3
5,370,899 + PS417_24755 0.62 -1.0
5,370,900 - PS417_24755 0.63 +0.9
5,371,382 - +0.1
5,371,387 + -1.0
5,371,387 + +0.6
5,371,388 - +0.4
5,371,388 - -0.6
5,371,391 - +0.9
5,371,391 - -0.2
5,371,391 - -1.6
5,371,507 + PS417_24760 0.20 -0.0
5,371,980 - -1.5
5,371,980 - +1.7
5,372,003 - -1.4
5,372,173 - PS417_24765 0.24 -1.2
5,372,191 + PS417_24765 0.26 -0.2

Or see this region's nucleotide sequence