Experiment: Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_24230 and PS417_24235 are separated by 267 nucleotides PS417_24235 and PS417_24240 are separated by 91 nucleotides
PS417_24230: PS417_24230 - ATP-dependent protease, at 5,255,068 to 5,257,506
_24230
PS417_24235: PS417_24235 - hypothetical protein, at 5,257,774 to 5,258,262
_24235
PS417_24240: PS417_24240 - membrane protein, at 5,258,354 to 5,260,207
_24240
Position (kb) 5257
5258
5259 Strain fitness (log2 ratio) -1
0
1
2
3
4
5 at 5257.223 kb on + strand, within PS417_24230 at 5257.224 kb on - strand, within PS417_24230 at 5257.224 kb on - strand, within PS417_24230 at 5257.224 kb on - strand, within PS417_24230 at 5257.224 kb on - strand, within PS417_24230 at 5257.224 kb on - strand, within PS417_24230 at 5257.517 kb on + strand at 5257.518 kb on - strand at 5257.518 kb on - strand at 5257.673 kb on + strand at 5257.674 kb on - strand at 5257.699 kb on + strand at 5257.699 kb on + strand at 5257.700 kb on - strand at 5257.700 kb on - strand at 5257.703 kb on - strand at 5257.703 kb on - strand at 5257.774 kb on - strand at 5257.926 kb on + strand, within PS417_24235 at 5257.927 kb on - strand, within PS417_24235 at 5257.997 kb on - strand, within PS417_24235 at 5258.087 kb on - strand, within PS417_24235 at 5258.087 kb on - strand, within PS417_24235 at 5258.260 kb on + strand at 5258.261 kb on - strand at 5258.331 kb on + strand at 5258.342 kb on + strand at 5258.343 kb on - strand at 5258.354 kb on - strand at 5258.510 kb on + strand at 5258.510 kb on + strand at 5258.510 kb on + strand at 5258.510 kb on + strand at 5258.511 kb on - strand at 5258.511 kb on - strand at 5258.511 kb on - strand at 5258.511 kb on - strand at 5258.880 kb on - strand, within PS417_24240 at 5259.122 kb on + strand, within PS417_24240 at 5259.237 kb on + strand, within PS417_24240
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 5,257,223 + PS417_24230 0.88 -1.4 5,257,224 - PS417_24230 0.88 +0.1 5,257,224 - PS417_24230 0.88 +2.5 5,257,224 - PS417_24230 0.88 +1.5 5,257,224 - PS417_24230 0.88 -0.1 5,257,224 - PS417_24230 0.88 -0.2 5,257,517 + -0.5 5,257,518 - -0.1 5,257,518 - -0.7 5,257,673 + -0.6 5,257,674 - +0.5 5,257,699 + +0.4 5,257,699 + +0.3 5,257,700 - +0.3 5,257,700 - +0.3 5,257,703 - -0.2 5,257,703 - +0.1 5,257,774 - -0.1 5,257,926 + PS417_24235 0.31 +0.7 5,257,927 - PS417_24235 0.31 +0.9 5,257,997 - PS417_24235 0.46 +0.9 5,258,087 - PS417_24235 0.64 +0.9 5,258,087 - PS417_24235 0.64 +1.0 5,258,260 + +1.4 5,258,261 - +0.2 5,258,331 + -0.4 5,258,342 + +0.3 5,258,343 - -0.6 5,258,354 - +5.0 5,258,510 + -0.5 5,258,510 + +1.6 5,258,510 + -0.1 5,258,510 + -0.6 5,258,511 - -0.2 5,258,511 - -0.4 5,258,511 - -0.6 5,258,511 - -0.4 5,258,880 - PS417_24240 0.28 +0.9 5,259,122 + PS417_24240 0.41 -0.4 5,259,237 + PS417_24240 0.48 +0.4
Or see this region's nucleotide sequence