Strain Fitness in Pseudomonas simiae WCS417 around PS417_23685

Experiment: Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_23680 and PS417_23685 are separated by 312 nucleotidesPS417_23685 and PS417_23690 overlap by 1 nucleotidesPS417_23690 and PS417_23695 are separated by 66 nucleotides PS417_23680: PS417_23680 - AraC family transcriptional regulator, at 5,120,111 to 5,121,091 _23680 PS417_23685: PS417_23685 - anthranilate 1,2-dioxygenase (deaminating, decarboxylating) large subunit [EC: 1.14.12.1] (from data), at 5,121,404 to 5,122,795 _23685 PS417_23690: PS417_23690 - Anthranilate 1,2-dioxygenase (deaminating, decarboxylating) (EC 1.14.12.1) (from data), at 5,122,795 to 5,123,286 _23690 PS417_23695: PS417_23695 - electron transfer component of the anthranilate 1,2-dioxygenase system (EC 1.14.12.1) (from data), at 5,123,353 to 5,124,360 _23695 Position (kb) 5121 5122 5123Strain fitness (log2 ratio) -2 -1 0 1 2at 5120.419 kb on - strand, within PS417_23680at 5120.419 kb on - strand, within PS417_23680at 5120.419 kb on - strand, within PS417_23680at 5120.419 kb on - strand, within PS417_23680at 5120.439 kb on + strand, within PS417_23680at 5120.440 kb on - strand, within PS417_23680at 5120.559 kb on + strand, within PS417_23680at 5120.560 kb on - strand, within PS417_23680at 5120.560 kb on - strandat 5120.595 kb on + strand, within PS417_23680at 5120.595 kb on + strand, within PS417_23680at 5120.875 kb on - strand, within PS417_23680at 5121.160 kb on + strandat 5121.161 kb on - strandat 5121.210 kb on + strandat 5121.363 kb on + strandat 5121.443 kb on - strandat 5121.563 kb on + strand, within PS417_23685at 5121.564 kb on - strand, within PS417_23685at 5121.764 kb on + strand, within PS417_23685at 5121.764 kb on + strand, within PS417_23685at 5121.764 kb on + strand, within PS417_23685at 5121.764 kb on + strand, within PS417_23685at 5121.765 kb on - strand, within PS417_23685at 5121.866 kb on + strand, within PS417_23685at 5121.866 kb on + strand, within PS417_23685at 5121.866 kb on + strand, within PS417_23685at 5121.867 kb on - strand, within PS417_23685at 5121.867 kb on - strand, within PS417_23685at 5122.010 kb on + strand, within PS417_23685at 5122.010 kb on + strand, within PS417_23685at 5122.017 kb on - strand, within PS417_23685at 5122.036 kb on - strand, within PS417_23685at 5122.082 kb on + strand, within PS417_23685at 5122.088 kb on + strand, within PS417_23685at 5122.088 kb on + strand, within PS417_23685at 5122.089 kb on - strandat 5122.089 kb on - strand, within PS417_23685at 5122.161 kb on - strand, within PS417_23685at 5122.354 kb on + strand, within PS417_23685at 5122.712 kb on + strandat 5122.713 kb on - strandat 5122.713 kb on - strandat 5122.814 kb on - strandat 5122.876 kb on + strand, within PS417_23690at 5122.876 kb on + strand, within PS417_23690at 5122.876 kb on + strand, within PS417_23690at 5122.876 kb on + strand, within PS417_23690at 5122.939 kb on + strand, within PS417_23690at 5122.940 kb on - strand, within PS417_23690at 5122.940 kb on - strand, within PS417_23690at 5122.975 kb on + strand, within PS417_23690at 5122.975 kb on + strand, within PS417_23690at 5122.975 kb on + strand, within PS417_23690at 5122.975 kb on + strand, within PS417_23690at 5122.976 kb on - strand, within PS417_23690at 5122.976 kb on - strand, within PS417_23690at 5122.978 kb on + strand, within PS417_23690at 5122.979 kb on - strand, within PS417_23690at 5123.170 kb on + strand, within PS417_23690at 5123.170 kb on + strand, within PS417_23690at 5123.170 kb on + strand, within PS417_23690at 5123.170 kb on + strand, within PS417_23690at 5123.171 kb on - strand, within PS417_23690at 5123.185 kb on + strand, within PS417_23690at 5123.332 kb on + strandat 5123.332 kb on + strandat 5123.332 kb on + strandat 5123.332 kb on + strandat 5123.333 kb on - strandat 5123.333 kb on - strandat 5123.333 kb on - strandat 5123.333 kb on - strandat 5123.336 kb on + strandat 5123.336 kb on + strandat 5123.522 kb on - strand, within PS417_23695at 5123.533 kb on + strand, within PS417_23695at 5123.533 kb on + strand, within PS417_23695at 5123.534 kb on - strand, within PS417_23695at 5123.534 kb on - strand, within PS417_23695at 5123.623 kb on + strand, within PS417_23695at 5123.624 kb on - strand, within PS417_23695at 5123.767 kb on + strand, within PS417_23695

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
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5,120,419 - PS417_23680 0.31 +0.3
5,120,419 - PS417_23680 0.31 -2.5
5,120,419 - PS417_23680 0.31 +1.0
5,120,419 - PS417_23680 0.31 +0.9
5,120,439 + PS417_23680 0.33 -0.3
5,120,440 - PS417_23680 0.34 +1.0
5,120,559 + PS417_23680 0.46 -0.8
5,120,560 - PS417_23680 0.46 -0.4
5,120,560 - +2.0
5,120,595 + PS417_23680 0.49 +1.6
5,120,595 + PS417_23680 0.49 -0.2
5,120,875 - PS417_23680 0.78 +1.3
5,121,160 + -0.4
5,121,161 - -0.0
5,121,210 + -0.2
5,121,363 + +1.8
5,121,443 - -0.0
5,121,563 + PS417_23685 0.11 +0.1
5,121,564 - PS417_23685 0.11 -0.1
5,121,764 + PS417_23685 0.26 +1.0
5,121,764 + PS417_23685 0.26 +0.7
5,121,764 + PS417_23685 0.26 +1.0
5,121,764 + PS417_23685 0.26 -0.4
5,121,765 - PS417_23685 0.26 +1.0
5,121,866 + PS417_23685 0.33 +0.5
5,121,866 + PS417_23685 0.33 -0.0
5,121,866 + PS417_23685 0.33 +0.9
5,121,867 - PS417_23685 0.33 +0.4
5,121,867 - PS417_23685 0.33 +0.5
5,122,010 + PS417_23685 0.44 -1.6
5,122,010 + PS417_23685 0.44 +0.5
5,122,017 - PS417_23685 0.44 -0.4
5,122,036 - PS417_23685 0.45 +0.2
5,122,082 + PS417_23685 0.49 +1.4
5,122,088 + PS417_23685 0.49 -0.1
5,122,088 + PS417_23685 0.49 -0.7
5,122,089 - -0.6
5,122,089 - PS417_23685 0.49 +0.7
5,122,161 - PS417_23685 0.54 +0.9
5,122,354 + PS417_23685 0.68 +0.1
5,122,712 + +0.6
5,122,713 - -0.7
5,122,713 - -0.8
5,122,814 - +0.4
5,122,876 + PS417_23690 0.16 -0.2
5,122,876 + PS417_23690 0.16 +0.8
5,122,876 + PS417_23690 0.16 +0.4
5,122,876 + PS417_23690 0.16 +0.4
5,122,939 + PS417_23690 0.29 -0.4
5,122,940 - PS417_23690 0.29 +2.6
5,122,940 - PS417_23690 0.29 -0.3
5,122,975 + PS417_23690 0.37 -0.4
5,122,975 + PS417_23690 0.37 -0.4
5,122,975 + PS417_23690 0.37 +0.0
5,122,975 + PS417_23690 0.37 -0.3
5,122,976 - PS417_23690 0.37 +0.1
5,122,976 - PS417_23690 0.37 +0.2
5,122,978 + PS417_23690 0.37 +2.1
5,122,979 - PS417_23690 0.37 -0.3
5,123,170 + PS417_23690 0.76 -1.2
5,123,170 + PS417_23690 0.76 -0.4
5,123,170 + PS417_23690 0.76 -0.0
5,123,170 + PS417_23690 0.76 +0.2
5,123,171 - PS417_23690 0.76 -0.5
5,123,185 + PS417_23690 0.79 +0.1
5,123,332 + +0.2
5,123,332 + -0.0
5,123,332 + -0.0
5,123,332 + -0.8
5,123,333 - +1.0
5,123,333 - -0.0
5,123,333 - -0.9
5,123,333 - -0.1
5,123,336 + -1.1
5,123,336 + +0.5
5,123,522 - PS417_23695 0.17 +0.2
5,123,533 + PS417_23695 0.18 -1.0
5,123,533 + PS417_23695 0.18 -1.0
5,123,534 - PS417_23695 0.18 +0.1
5,123,534 - PS417_23695 0.18 +0.4
5,123,623 + PS417_23695 0.27 +0.3
5,123,624 - PS417_23695 0.27 -0.1
5,123,767 + PS417_23695 0.41 +1.5

Or see this region's nucleotide sequence