Experiment: Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_22950 and PS417_22955 are separated by 140 nucleotides PS417_22955 and PS417_22960 overlap by 4 nucleotides PS417_22960 and PS417_22965 are separated by 36 nucleotides PS417_22965 and PS417_22970 are separated by 149 nucleotides PS417_22970 and PS417_22975 are separated by 37 nucleotides
PS417_22950: PS417_22950 - preQ0 transporter, at 4,972,571 to 4,973,038
_22950
PS417_22955: PS417_22955 - Fe-S protein, at 4,973,179 to 4,973,397
_22955
PS417_22960: PS417_22960 - hypothetical protein, at 4,973,394 to 4,973,918
_22960
PS417_22965: PS417_22965 - DNA mismatch repair protein MutT, at 4,973,955 to 4,974,557
_22965
PS417_22970: PS417_22970 - ADP-ribose pyrophosphatase, at 4,974,707 to 4,975,255
_22970
PS417_22975: PS417_22975 - hypothetical protein, at 4,975,293 to 4,975,796
_22975
Position (kb) 4973
4974
4975 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4973.072 kb on + strand at 4973.073 kb on - strand at 4973.090 kb on - strand at 4973.208 kb on + strand, within PS417_22955 at 4973.305 kb on + strand, within PS417_22955 at 4973.331 kb on + strand, within PS417_22955 at 4973.331 kb on + strand, within PS417_22955 at 4973.331 kb on + strand at 4973.331 kb on + strand, within PS417_22955 at 4973.332 kb on - strand, within PS417_22955 at 4973.355 kb on + strand, within PS417_22955 at 4973.356 kb on - strand, within PS417_22955 at 4973.438 kb on + strand at 4973.438 kb on + strand at 4973.438 kb on + strand at 4973.446 kb on + strand at 4973.446 kb on + strand at 4973.447 kb on - strand, within PS417_22960 at 4973.447 kb on - strand, within PS417_22960 at 4973.641 kb on + strand, within PS417_22960 at 4973.642 kb on - strand, within PS417_22960 at 4973.912 kb on - strand at 4973.956 kb on + strand at 4973.956 kb on + strand at 4973.956 kb on + strand at 4973.956 kb on + strand at 4973.957 kb on - strand at 4973.957 kb on - strand at 4974.030 kb on + strand, within PS417_22965 at 4974.091 kb on + strand, within PS417_22965 at 4974.091 kb on + strand, within PS417_22965 at 4974.091 kb on + strand, within PS417_22965 at 4974.092 kb on - strand, within PS417_22965 at 4974.098 kb on + strand at 4974.099 kb on - strand, within PS417_22965 at 4974.099 kb on - strand, within PS417_22965 at 4974.099 kb on - strand, within PS417_22965 at 4974.099 kb on - strand, within PS417_22965 at 4974.203 kb on - strand, within PS417_22965 at 4974.212 kb on - strand, within PS417_22965 at 4974.312 kb on + strand, within PS417_22965 at 4974.313 kb on - strand, within PS417_22965 at 4974.543 kb on + strand at 4974.543 kb on + strand at 4974.543 kb on + strand at 4975.000 kb on + strand, within PS417_22970 at 4975.000 kb on + strand, within PS417_22970 at 4975.004 kb on + strand, within PS417_22970 at 4975.027 kb on + strand, within PS417_22970 at 4975.028 kb on - strand, within PS417_22970 at 4975.043 kb on - strand, within PS417_22970 at 4975.170 kb on + strand, within PS417_22970 at 4975.291 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 4,973,072 + +0.4 4,973,073 - +0.4 4,973,090 - -1.8 4,973,208 + PS417_22955 0.13 +0.6 4,973,305 + PS417_22955 0.58 +0.2 4,973,331 + PS417_22955 0.69 -0.3 4,973,331 + PS417_22955 0.69 -0.0 4,973,331 + -0.6 4,973,331 + PS417_22955 0.69 -0.8 4,973,332 - PS417_22955 0.70 -0.6 4,973,355 + PS417_22955 0.80 +0.0 4,973,356 - PS417_22955 0.81 -1.6 4,973,438 + +0.2 4,973,438 + -1.0 4,973,438 + -0.0 4,973,446 + -1.7 4,973,446 + +1.0 4,973,447 - PS417_22960 0.10 -0.4 4,973,447 - PS417_22960 0.10 +0.3 4,973,641 + PS417_22960 0.47 -0.5 4,973,642 - PS417_22960 0.47 -0.4 4,973,912 - +0.1 4,973,956 + +1.0 4,973,956 + -1.1 4,973,956 + +0.1 4,973,956 + -0.7 4,973,957 - +0.0 4,973,957 - -1.0 4,974,030 + PS417_22965 0.12 +1.3 4,974,091 + PS417_22965 0.23 +2.0 4,974,091 + PS417_22965 0.23 +3.3 4,974,091 + PS417_22965 0.23 +1.6 4,974,092 - PS417_22965 0.23 +2.8 4,974,098 + -1.0 4,974,099 - PS417_22965 0.24 +0.6 4,974,099 - PS417_22965 0.24 +0.9 4,974,099 - PS417_22965 0.24 +0.3 4,974,099 - PS417_22965 0.24 +0.9 4,974,203 - PS417_22965 0.41 +2.0 4,974,212 - PS417_22965 0.43 +1.8 4,974,312 + PS417_22965 0.59 +0.8 4,974,313 - PS417_22965 0.59 +2.1 4,974,543 + +0.7 4,974,543 + +0.2 4,974,543 + +0.4 4,975,000 + PS417_22970 0.53 -0.0 4,975,000 + PS417_22970 0.53 +0.3 4,975,004 + PS417_22970 0.54 -0.0 4,975,027 + PS417_22970 0.58 +0.9 4,975,028 - PS417_22970 0.58 +0.5 4,975,043 - PS417_22970 0.61 -0.6 4,975,170 + PS417_22970 0.84 -0.1 4,975,291 + -1.1
Or see this region's nucleotide sequence