Experiment: Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_03665 and PS417_03670 are separated by 0 nucleotides PS417_03670 and PS417_03675 are separated by 3 nucleotides
PS417_03665: PS417_03665 - deoxyribodipyrimidine photolyase, at 829,575 to 831,020
_03665
PS417_03670: PS417_03670 - MerR family transcriptional regulator, at 831,021 to 831,950
_03670
PS417_03675: PS417_03675 - hypothetical protein, at 831,954 to 832,913
_03675
Position (kb) 831
832 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 830.167 kb on + strand, within PS417_03665 at 830.351 kb on - strand, within PS417_03665 at 830.351 kb on - strand, within PS417_03665 at 830.351 kb on - strand, within PS417_03665 at 830.351 kb on - strand, within PS417_03665 at 830.353 kb on + strand, within PS417_03665 at 830.551 kb on + strand, within PS417_03665 at 830.587 kb on + strand, within PS417_03665 at 830.608 kb on - strand, within PS417_03665 at 830.772 kb on + strand, within PS417_03665 at 830.772 kb on + strand, within PS417_03665 at 830.822 kb on + strand, within PS417_03665 at 830.822 kb on + strand, within PS417_03665 at 831.022 kb on + strand at 831.105 kb on + strand at 831.132 kb on + strand, within PS417_03670 at 831.217 kb on + strand, within PS417_03670 at 831.218 kb on - strand, within PS417_03670 at 831.218 kb on - strand, within PS417_03670 at 831.408 kb on - strand, within PS417_03670 at 831.416 kb on - strand, within PS417_03670 at 831.749 kb on + strand, within PS417_03670 at 831.756 kb on + strand, within PS417_03670 at 831.756 kb on + strand, within PS417_03670 at 831.756 kb on + strand, within PS417_03670 at 831.756 kb on + strand, within PS417_03670 at 831.757 kb on - strand, within PS417_03670 at 831.757 kb on - strand, within PS417_03670 at 831.933 kb on + strand at 831.955 kb on + strand at 832.018 kb on + strand at 832.018 kb on + strand at 832.333 kb on + strand, within PS417_03675 at 832.333 kb on + strand, within PS417_03675 at 832.333 kb on + strand, within PS417_03675 at 832.334 kb on - strand, within PS417_03675 at 832.340 kb on - strand, within PS417_03675 at 832.513 kb on + strand, within PS417_03675 at 832.514 kb on - strand, within PS417_03675 at 832.514 kb on - strand, within PS417_03675 at 832.559 kb on - strand, within PS417_03675 at 832.652 kb on - strand, within PS417_03675 at 832.913 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days remove 830,167 + PS417_03665 0.41 -0.5 830,351 - PS417_03665 0.54 -1.2 830,351 - PS417_03665 0.54 -0.4 830,351 - PS417_03665 0.54 -0.2 830,351 - PS417_03665 0.54 -0.3 830,353 + PS417_03665 0.54 -0.6 830,551 + PS417_03665 0.67 -0.7 830,587 + PS417_03665 0.70 -0.6 830,608 - PS417_03665 0.71 -0.1 830,772 + PS417_03665 0.83 +1.6 830,772 + PS417_03665 0.83 +0.3 830,822 + PS417_03665 0.86 -0.4 830,822 + PS417_03665 0.86 -0.3 831,022 + +3.3 831,105 + -1.8 831,132 + PS417_03670 0.12 -0.3 831,217 + PS417_03670 0.21 +1.0 831,218 - PS417_03670 0.21 -0.3 831,218 - PS417_03670 0.21 -0.1 831,408 - PS417_03670 0.42 +1.6 831,416 - PS417_03670 0.42 +1.0 831,749 + PS417_03670 0.78 +0.7 831,756 + PS417_03670 0.79 -0.4 831,756 + PS417_03670 0.79 +0.3 831,756 + PS417_03670 0.79 +0.1 831,756 + PS417_03670 0.79 +3.1 831,757 - PS417_03670 0.79 +1.5 831,757 - PS417_03670 0.79 +0.3 831,933 + -0.0 831,955 + -0.8 832,018 + -0.2 832,018 + +2.6 832,333 + PS417_03675 0.39 -0.2 832,333 + PS417_03675 0.39 +0.4 832,333 + PS417_03675 0.39 +0.2 832,334 - PS417_03675 0.40 +0.5 832,340 - PS417_03675 0.40 +3.7 832,513 + PS417_03675 0.58 +0.0 832,514 - PS417_03675 0.58 +1.0 832,514 - PS417_03675 0.58 +0.5 832,559 - PS417_03675 0.63 -0.0 832,652 - PS417_03675 0.73 -1.7 832,913 + +0.0
Or see this region's nucleotide sequence