Experiment: Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_03655 and PS417_03660 overlap by 4 nucleotides PS417_03660 and PS417_03665 overlap by 8 nucleotides PS417_03665 and PS417_03670 are separated by 0 nucleotides PS417_03670 and PS417_03675 are separated by 3 nucleotides
PS417_03655: PS417_03655 - short-chain dehydrogenase, at 828,381 to 829,163
_03655
PS417_03660: PS417_03660 - transcriptional regulator, at 829,160 to 829,582
_03660
PS417_03665: PS417_03665 - deoxyribodipyrimidine photolyase, at 829,575 to 831,020
_03665
PS417_03670: PS417_03670 - MerR family transcriptional regulator, at 831,021 to 831,950
_03670
PS417_03675: PS417_03675 - hypothetical protein, at 831,954 to 832,913
_03675
Position (kb) 829
830
831
832 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 828.683 kb on - strand, within PS417_03655 at 828.709 kb on + strand, within PS417_03655 at 828.709 kb on + strand, within PS417_03655 at 828.709 kb on + strand, within PS417_03655 at 828.815 kb on - strand, within PS417_03655 at 829.016 kb on - strand, within PS417_03655 at 829.218 kb on + strand, within PS417_03660 at 829.218 kb on + strand, within PS417_03660 at 829.219 kb on - strand, within PS417_03660 at 829.242 kb on + strand, within PS417_03660 at 829.243 kb on - strand, within PS417_03660 at 829.258 kb on - strand, within PS417_03660 at 829.422 kb on + strand, within PS417_03660 at 829.422 kb on + strand, within PS417_03660 at 829.422 kb on + strand, within PS417_03660 at 829.438 kb on - strand, within PS417_03660 at 829.825 kb on + strand, within PS417_03665 at 829.826 kb on - strand, within PS417_03665 at 829.826 kb on - strand, within PS417_03665 at 830.167 kb on + strand, within PS417_03665 at 830.351 kb on - strand, within PS417_03665 at 830.351 kb on - strand, within PS417_03665 at 830.351 kb on - strand, within PS417_03665 at 830.351 kb on - strand, within PS417_03665 at 830.353 kb on + strand, within PS417_03665 at 830.551 kb on + strand, within PS417_03665 at 830.587 kb on + strand, within PS417_03665 at 830.608 kb on - strand, within PS417_03665 at 830.772 kb on + strand, within PS417_03665 at 830.772 kb on + strand, within PS417_03665 at 830.822 kb on + strand, within PS417_03665 at 830.822 kb on + strand, within PS417_03665 at 831.022 kb on + strand at 831.105 kb on + strand at 831.132 kb on + strand, within PS417_03670 at 831.217 kb on + strand, within PS417_03670 at 831.218 kb on - strand, within PS417_03670 at 831.218 kb on - strand, within PS417_03670 at 831.408 kb on - strand, within PS417_03670 at 831.416 kb on - strand, within PS417_03670 at 831.749 kb on + strand, within PS417_03670 at 831.756 kb on + strand, within PS417_03670 at 831.756 kb on + strand, within PS417_03670 at 831.756 kb on + strand, within PS417_03670 at 831.756 kb on + strand, within PS417_03670 at 831.757 kb on - strand, within PS417_03670 at 831.757 kb on - strand, within PS417_03670 at 831.933 kb on + strand at 831.955 kb on + strand at 832.018 kb on + strand at 832.018 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days remove 828,683 - PS417_03655 0.39 -1.0 828,709 + PS417_03655 0.42 -0.0 828,709 + PS417_03655 0.42 +0.1 828,709 + PS417_03655 0.42 -1.3 828,815 - PS417_03655 0.55 +0.3 829,016 - PS417_03655 0.81 -1.3 829,218 + PS417_03660 0.14 +0.2 829,218 + PS417_03660 0.14 +1.0 829,219 - PS417_03660 0.14 -1.3 829,242 + PS417_03660 0.19 +0.3 829,243 - PS417_03660 0.20 +0.4 829,258 - PS417_03660 0.23 -2.2 829,422 + PS417_03660 0.62 +0.1 829,422 + PS417_03660 0.62 -0.4 829,422 + PS417_03660 0.62 -1.0 829,438 - PS417_03660 0.66 +0.8 829,825 + PS417_03665 0.17 +0.2 829,826 - PS417_03665 0.17 +0.1 829,826 - PS417_03665 0.17 -0.5 830,167 + PS417_03665 0.41 -0.5 830,351 - PS417_03665 0.54 -1.2 830,351 - PS417_03665 0.54 -0.4 830,351 - PS417_03665 0.54 -0.2 830,351 - PS417_03665 0.54 -0.3 830,353 + PS417_03665 0.54 -0.6 830,551 + PS417_03665 0.67 -0.7 830,587 + PS417_03665 0.70 -0.6 830,608 - PS417_03665 0.71 -0.1 830,772 + PS417_03665 0.83 +1.6 830,772 + PS417_03665 0.83 +0.3 830,822 + PS417_03665 0.86 -0.4 830,822 + PS417_03665 0.86 -0.3 831,022 + +3.3 831,105 + -1.8 831,132 + PS417_03670 0.12 -0.3 831,217 + PS417_03670 0.21 +1.0 831,218 - PS417_03670 0.21 -0.3 831,218 - PS417_03670 0.21 -0.1 831,408 - PS417_03670 0.42 +1.6 831,416 - PS417_03670 0.42 +1.0 831,749 + PS417_03670 0.78 +0.7 831,756 + PS417_03670 0.79 -0.4 831,756 + PS417_03670 0.79 +0.3 831,756 + PS417_03670 0.79 +0.1 831,756 + PS417_03670 0.79 +3.1 831,757 - PS417_03670 0.79 +1.5 831,757 - PS417_03670 0.79 +0.3 831,933 + -0.0 831,955 + -0.8 832,018 + -0.2 832,018 + +2.6
Or see this region's nucleotide sequence