Experiment: Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_24530 and PS417_24535 are separated by 176 nucleotides PS417_24535 and PS417_24540 are separated by 40 nucleotides
PS417_24530: PS417_24530 - ABC transporter substrate-binding protein, at 5,322,183 to 5,322,914
_24530
PS417_24535: PS417_24535 - membrane protein, at 5,323,091 to 5,323,750
_24535
PS417_24540: PS417_24540 - endonuclease, at 5,323,791 to 5,324,879
_24540
Position (kb) 5323
5324 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 5322.496 kb on + strand, within PS417_24530 at 5322.497 kb on - strand, within PS417_24530 at 5322.497 kb on - strand, within PS417_24530 at 5322.717 kb on - strand, within PS417_24530 at 5322.775 kb on + strand, within PS417_24530 at 5322.775 kb on + strand, within PS417_24530 at 5322.775 kb on + strand, within PS417_24530 at 5322.776 kb on - strand, within PS417_24530 at 5322.776 kb on - strand, within PS417_24530 at 5322.776 kb on - strand, within PS417_24530 at 5322.974 kb on + strand at 5322.974 kb on + strand at 5322.975 kb on - strand at 5322.975 kb on - strand at 5323.022 kb on + strand at 5323.023 kb on - strand at 5323.023 kb on - strand at 5323.032 kb on + strand at 5323.033 kb on - strand at 5323.073 kb on - strand at 5323.278 kb on - strand, within PS417_24535 at 5323.337 kb on - strand, within PS417_24535 at 5323.478 kb on + strand, within PS417_24535 at 5323.751 kb on + strand at 5323.780 kb on - strand at 5323.802 kb on - strand at 5323.861 kb on - strand at 5323.977 kb on + strand, within PS417_24540 at 5323.977 kb on + strand, within PS417_24540 at 5323.978 kb on - strand, within PS417_24540 at 5324.008 kb on - strand, within PS417_24540 at 5324.397 kb on + strand, within PS417_24540 at 5324.513 kb on + strand, within PS417_24540 at 5324.613 kb on + strand, within PS417_24540
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days remove 5,322,496 + PS417_24530 0.43 +0.3 5,322,497 - PS417_24530 0.43 -0.4 5,322,497 - PS417_24530 0.43 -2.6 5,322,717 - PS417_24530 0.73 -0.4 5,322,775 + PS417_24530 0.81 +0.0 5,322,775 + PS417_24530 0.81 +1.0 5,322,775 + PS417_24530 0.81 -0.7 5,322,776 - PS417_24530 0.81 -0.2 5,322,776 - PS417_24530 0.81 -1.0 5,322,776 - PS417_24530 0.81 -0.4 5,322,974 + -0.9 5,322,974 + +2.0 5,322,975 - -0.5 5,322,975 - -0.4 5,323,022 + -3.3 5,323,023 - -0.1 5,323,023 - +0.3 5,323,032 + +0.2 5,323,033 - -2.5 5,323,073 - -0.4 5,323,278 - PS417_24535 0.28 +4.7 5,323,337 - PS417_24535 0.37 -1.0 5,323,478 + PS417_24535 0.59 +0.4 5,323,751 + +0.1 5,323,780 - -0.6 5,323,802 - +0.0 5,323,861 - -0.3 5,323,977 + PS417_24540 0.17 -0.1 5,323,977 + PS417_24540 0.17 -0.7 5,323,978 - PS417_24540 0.17 -1.9 5,324,008 - PS417_24540 0.20 -0.8 5,324,397 + PS417_24540 0.56 -0.3 5,324,513 + PS417_24540 0.66 +0.7 5,324,613 + PS417_24540 0.75 +1.1
Or see this region's nucleotide sequence