Experiment: Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_01930 and PS417_01935 are separated by 110 nucleotides PS417_01935 and PS417_01940 are separated by 216 nucleotides PS417_01940 and PS417_01945 are separated by 35 nucleotides
PS417_01930: PS417_01930 - arginyl-tRNA synthetase, at 426,539 to 428,275
_01930
PS417_01935: PS417_01935 - primosomal protein N', at 428,386 to 430,605
_01935
PS417_01940: PS417_01940 - 50S ribosomal protein L31, at 430,822 to 431,040
_01940
PS417_01945: PS417_01945 - nuclease, at 431,076 to 431,870
_01945
Position (kb) 428
429
430
431 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 428.375 kb on + strand at 428.387 kb on + strand at 428.388 kb on - strand at 428.388 kb on - strand at 428.388 kb on - strand at 428.390 kb on + strand at 428.391 kb on - strand at 430.620 kb on - strand at 430.654 kb on + strand at 430.655 kb on - strand at 431.038 kb on + strand at 431.302 kb on - strand, within PS417_01945 at 431.419 kb on - strand, within PS417_01945 at 431.508 kb on - strand, within PS417_01945
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days remove 428,375 + +3.4 428,387 + -0.8 428,388 - +0.1 428,388 - +0.7 428,388 - -0.9 428,390 + -0.8 428,391 - +0.3 430,620 - -2.9 430,654 + +0.2 430,655 - -0.1 431,038 + -0.9 431,302 - PS417_01945 0.28 -0.1 431,419 - PS417_01945 0.43 +0.9 431,508 - PS417_01945 0.54 +1.5
Or see this region's nucleotide sequence