Strain Fitness in Pseudomonas simiae WCS417 around PS417_06255

Experiment: Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_06250 and PS417_06255 are separated by 45 nucleotidesPS417_06255 and PS417_06260 are separated by 3 nucleotides PS417_06250: PS417_06250 - membrane protein, at 1,386,328 to 1,388,715 _06250 PS417_06255: PS417_06255 - Skp, at 1,388,761 to 1,389,264 _06255 PS417_06260: PS417_06260 - UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase, at 1,389,268 to 1,390,323 _06260 Position (kb) 1388 1389 1390Strain fitness (log2 ratio) -1 0 1at 1388.755 kb on + strandat 1388.766 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
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1,388,755 + +1.0
1,388,766 + +1.0

Or see this region's nucleotide sequence