Experiment: Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_03280 and PS417_03285 overlap by 4 nucleotides PS417_03285 and PS417_03290 overlap by 11 nucleotides PS417_03290 and PS417_03295 are separated by 148 nucleotides PS417_03295 and PS417_03300 overlap by 8 nucleotides
PS417_03280: PS417_03280 - chromosome partitioning protein ParA, at 751,383 to 754,223
_03280
PS417_03285: PS417_03285 - chromosome partitioning protein, at 754,220 to 754,927
_03285
PS417_03290: PS417_03290 - hypothetical protein, at 754,917 to 756,194
_03290
PS417_03295: PS417_03295 - energy transducer TonB, at 756,343 to 757,128
_03295
PS417_03300: PS417_03300 - alanine acetyltransferase, at 757,121 to 757,573
_03300
Position (kb) 754
755
756
757 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 753.988 kb on + strand at 753.988 kb on + strand at 753.988 kb on + strand at 753.989 kb on - strand at 754.036 kb on + strand at 754.036 kb on + strand at 754.106 kb on + strand at 754.126 kb on + strand at 754.126 kb on + strand at 754.127 kb on - strand at 754.378 kb on + strand, within PS417_03285 at 754.570 kb on - strand, within PS417_03285 at 754.743 kb on + strand, within PS417_03285 at 754.746 kb on + strand, within PS417_03285 at 754.747 kb on - strand, within PS417_03285 at 754.834 kb on - strand, within PS417_03285 at 754.934 kb on + strand at 755.273 kb on - strand, within PS417_03290 at 755.278 kb on + strand, within PS417_03290 at 755.278 kb on + strand, within PS417_03290 at 755.279 kb on - strand, within PS417_03290 at 755.279 kb on - strand, within PS417_03290 at 755.279 kb on - strand, within PS417_03290 at 755.279 kb on - strand, within PS417_03290 at 755.860 kb on + strand, within PS417_03290 at 755.861 kb on - strand, within PS417_03290 at 755.938 kb on + strand, within PS417_03290 at 756.145 kb on - strand at 756.145 kb on - strand at 756.145 kb on - strand at 756.219 kb on + strand at 756.219 kb on + strand at 756.219 kb on + strand at 756.220 kb on - strand at 756.234 kb on + strand at 756.235 kb on - strand at 756.323 kb on + strand at 757.134 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days remove 753,988 + -1.0 753,988 + +3.3 753,988 + +1.6 753,989 - +1.6 754,036 + +0.9 754,036 + +0.2 754,106 + +5.3 754,126 + +0.2 754,126 + -1.6 754,127 - -0.0 754,378 + PS417_03285 0.22 +0.1 754,570 - PS417_03285 0.49 +0.3 754,743 + PS417_03285 0.74 +0.7 754,746 + PS417_03285 0.74 +2.9 754,747 - PS417_03285 0.74 +0.9 754,834 - PS417_03285 0.87 +2.4 754,934 + -0.4 755,273 - PS417_03290 0.28 -0.8 755,278 + PS417_03290 0.28 -0.6 755,278 + PS417_03290 0.28 -0.4 755,279 - PS417_03290 0.28 +1.1 755,279 - PS417_03290 0.28 +0.5 755,279 - PS417_03290 0.28 +4.1 755,279 - PS417_03290 0.28 +0.5 755,860 + PS417_03290 0.74 -1.7 755,861 - PS417_03290 0.74 +0.1 755,938 + PS417_03290 0.80 +1.2 756,145 - +0.9 756,145 - +2.4 756,145 - -1.9 756,219 + -1.1 756,219 + +1.8 756,219 + -2.3 756,220 - -1.5 756,234 + +0.8 756,235 - -1.0 756,323 + -0.6 757,134 + -0.4
Or see this region's nucleotide sequence