Experiment: Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_02905 and PS417_02910 overlap by 1 nucleotides PS417_02910 and PS417_02915 overlap by 1 nucleotides PS417_02915 and PS417_02920 are separated by 236 nucleotides
PS417_02905: PS417_02905 - precorrin isomerase, at 663,150 to 663,776
_02905
PS417_02910: PS417_02910 - precorrin-2 C20-methyltransferase, at 663,776 to 664,507
_02910
PS417_02915: PS417_02915 - precorrin-3B C17-methyltransferase, at 664,507 to 666,144
_02915
PS417_02920: PS417_02920 - hypothetical protein, at 666,381 to 667,160
_02920
Position (kb) 664
665
666
667 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 664.008 kb on - strand, within PS417_02910 at 664.124 kb on + strand, within PS417_02910 at 664.125 kb on - strand, within PS417_02910 at 664.125 kb on - strand, within PS417_02910 at 664.130 kb on + strand, within PS417_02910 at 664.130 kb on + strand, within PS417_02910 at 664.229 kb on + strand, within PS417_02910 at 664.391 kb on + strand, within PS417_02910 at 664.392 kb on - strand, within PS417_02910 at 664.524 kb on + strand at 664.525 kb on - strand at 664.631 kb on - strand at 664.663 kb on + strand at 664.991 kb on + strand at 665.114 kb on - strand, within PS417_02915 at 665.482 kb on + strand, within PS417_02915 at 665.483 kb on - strand, within PS417_02915 at 665.603 kb on + strand, within PS417_02915 at 665.866 kb on + strand, within PS417_02915 at 665.866 kb on + strand, within PS417_02915 at 665.867 kb on - strand at 666.335 kb on + strand at 666.336 kb on - strand at 666.347 kb on - strand at 666.347 kb on - strand at 666.347 kb on - strand at 666.347 kb on - strand at 666.378 kb on - strand at 666.410 kb on + strand at 666.438 kb on + strand at 666.568 kb on - strand, within PS417_02920 at 666.575 kb on + strand, within PS417_02920 at 666.583 kb on - strand, within PS417_02920 at 666.583 kb on - strand, within PS417_02920 at 666.583 kb on - strand, within PS417_02920 at 666.583 kb on - strand, within PS417_02920 at 666.583 kb on - strand, within PS417_02920 at 666.600 kb on + strand, within PS417_02920 at 666.600 kb on + strand, within PS417_02920 at 666.600 kb on + strand, within PS417_02920 at 666.600 kb on + strand, within PS417_02920 at 666.601 kb on - strand, within PS417_02920 at 666.601 kb on - strand, within PS417_02920 at 666.601 kb on - strand, within PS417_02920 at 666.759 kb on - strand, within PS417_02920 at 666.811 kb on + strand, within PS417_02920 at 666.856 kb on + strand, within PS417_02920 at 666.969 kb on + strand, within PS417_02920 at 666.970 kb on - strand, within PS417_02920 at 666.970 kb on - strand, within PS417_02920 at 666.997 kb on + strand, within PS417_02920 at 666.998 kb on - strand, within PS417_02920
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days remove 664,008 - PS417_02910 0.32 +0.0 664,124 + PS417_02910 0.48 +0.3 664,125 - PS417_02910 0.48 +0.1 664,125 - PS417_02910 0.48 -1.5 664,130 + PS417_02910 0.48 -1.1 664,130 + PS417_02910 0.48 +3.2 664,229 + PS417_02910 0.62 -0.4 664,391 + PS417_02910 0.84 +1.0 664,392 - PS417_02910 0.84 +0.6 664,524 + -1.2 664,525 - -1.0 664,631 - -0.4 664,663 + +0.0 664,991 + +1.6 665,114 - PS417_02915 0.37 -1.7 665,482 + PS417_02915 0.60 -0.7 665,483 - PS417_02915 0.60 -1.1 665,603 + PS417_02915 0.67 -0.6 665,866 + PS417_02915 0.83 +0.6 665,866 + PS417_02915 0.83 -0.9 665,867 - +1.6 666,335 + +1.6 666,336 - +0.6 666,347 - +0.6 666,347 - +0.3 666,347 - -1.5 666,347 - +0.7 666,378 - -0.2 666,410 + +0.6 666,438 + -1.6 666,568 - PS417_02920 0.24 +0.4 666,575 + PS417_02920 0.25 -0.4 666,583 - PS417_02920 0.26 +2.5 666,583 - PS417_02920 0.26 -0.7 666,583 - PS417_02920 0.26 -1.1 666,583 - PS417_02920 0.26 -0.8 666,583 - PS417_02920 0.26 -1.2 666,600 + PS417_02920 0.28 -0.3 666,600 + PS417_02920 0.28 -2.7 666,600 + PS417_02920 0.28 +0.0 666,600 + PS417_02920 0.28 -0.7 666,601 - PS417_02920 0.28 -0.7 666,601 - PS417_02920 0.28 +0.5 666,601 - PS417_02920 0.28 -1.2 666,759 - PS417_02920 0.48 +1.0 666,811 + PS417_02920 0.55 -0.8 666,856 + PS417_02920 0.61 -1.0 666,969 + PS417_02920 0.75 -0.0 666,970 - PS417_02920 0.76 -1.2 666,970 - PS417_02920 0.76 +2.5 666,997 + PS417_02920 0.79 +0.8 666,998 - PS417_02920 0.79 +0.1
Or see this region's nucleotide sequence