Experiment: Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_02435 and PS417_02440 are separated by 3 nucleotides PS417_02440 and PS417_02445 are separated by 51 nucleotides
PS417_02435: PS417_02435 - flagellar motor protein MotA, at 558,202 to 559,053
_02435
PS417_02440: PS417_02440 - flagellar motor protein MotB, at 559,057 to 560,076
_02440
PS417_02445: PS417_02445 - GTPase RsgA, at 560,128 to 561,159
_02445
Position (kb) 559
560
561 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6
7
8
9 at 558.110 kb on + strand at 558.111 kb on - strand at 558.136 kb on + strand at 558.136 kb on + strand at 558.137 kb on - strand at 558.137 kb on - strand at 558.156 kb on - strand at 558.164 kb on + strand at 558.164 kb on + strand at 558.164 kb on + strand at 558.165 kb on - strand at 558.165 kb on - strand at 558.190 kb on + strand at 558.190 kb on + strand at 558.190 kb on + strand at 558.190 kb on + strand at 558.190 kb on + strand at 558.191 kb on - strand at 558.191 kb on - strand at 558.191 kb on - strand at 558.201 kb on + strand at 558.201 kb on + strand at 558.202 kb on - strand at 558.208 kb on - strand at 558.254 kb on - strand at 558.271 kb on - strand at 558.422 kb on - strand, within PS417_02435 at 558.446 kb on - strand, within PS417_02435 at 558.571 kb on + strand, within PS417_02435 at 558.571 kb on + strand, within PS417_02435 at 558.571 kb on + strand, within PS417_02435 at 558.572 kb on - strand, within PS417_02435 at 558.583 kb on + strand, within PS417_02435 at 558.583 kb on + strand, within PS417_02435 at 558.712 kb on - strand, within PS417_02435 at 558.740 kb on + strand, within PS417_02435 at 558.914 kb on - strand, within PS417_02435 at 559.231 kb on + strand, within PS417_02440 at 559.232 kb on - strand, within PS417_02440 at 559.676 kb on - strand, within PS417_02440 at 559.968 kb on + strand, within PS417_02440 at 559.969 kb on - strand, within PS417_02440 at 560.085 kb on + strand at 560.132 kb on + strand at 560.132 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days remove 558,110 + -2.2 558,111 - +2.9 558,136 + +1.0 558,136 + -0.1 558,137 - +0.9 558,137 - +2.7 558,156 - +3.4 558,164 + +0.6 558,164 + +1.4 558,164 + +1.6 558,165 - -0.6 558,165 - +0.8 558,190 + +0.8 558,190 + +0.9 558,190 + -1.1 558,190 + +2.0 558,190 + -0.1 558,191 - -0.6 558,191 - +4.2 558,191 - +3.3 558,201 + -1.2 558,201 + -0.1 558,202 - -1.8 558,208 - -0.4 558,254 - +1.3 558,271 - +1.6 558,422 - PS417_02435 0.26 +0.5 558,446 - PS417_02435 0.29 +2.8 558,571 + PS417_02435 0.43 +0.3 558,571 + PS417_02435 0.43 -0.4 558,571 + PS417_02435 0.43 -0.4 558,572 - PS417_02435 0.43 +0.8 558,583 + PS417_02435 0.45 -0.2 558,583 + PS417_02435 0.45 +1.9 558,712 - PS417_02435 0.60 +1.6 558,740 + PS417_02435 0.63 -2.0 558,914 - PS417_02435 0.84 +2.4 559,231 + PS417_02440 0.17 +5.7 559,232 - PS417_02440 0.17 +9.4 559,676 - PS417_02440 0.61 +0.6 559,968 + PS417_02440 0.89 +0.0 559,969 - PS417_02440 0.89 +1.3 560,085 + -1.1 560,132 + -0.2 560,132 + +0.1
Or see this region's nucleotide sequence