Strain Fitness in Pseudomonas simiae WCS417 around PS417_22890

Experiment: Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_22885 and PS417_22890 are separated by 129 nucleotidesPS417_22890 and PS417_22895 are separated by 141 nucleotides PS417_22885: PS417_22885 - homoserine dehydrogenase, at 4,959,847 to 4,961,151 _22885 PS417_22890: PS417_22890 - protein-disulfide isomerase, at 4,961,281 to 4,962,012 _22890 PS417_22895: PS417_22895 - tyrosine recombinase XerD, at 4,962,154 to 4,963,050 _22895 Position (kb) 4961 4962 4963Strain fitness (log2 ratio) -2 -1 0 1at 4960.399 kb on - strand, within PS417_22885at 4962.184 kb on - strandat 4962.232 kb on + strandat 4962.474 kb on - strand, within PS417_22895at 4962.733 kb on + strand, within PS417_22895at 4962.733 kb on + strand, within PS417_22895at 4962.734 kb on - strand, within PS417_22895at 4962.795 kb on - strand, within PS417_22895at 4962.795 kb on - strand, within PS417_22895at 4962.848 kb on + strand, within PS417_22895at 4962.848 kb on + strand, within PS417_22895

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
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4,960,399 - PS417_22885 0.42 +1.6
4,962,184 - -0.5
4,962,232 + -0.4
4,962,474 - PS417_22895 0.36 -1.0
4,962,733 + PS417_22895 0.65 -1.9
4,962,733 + PS417_22895 0.65 -1.5
4,962,734 - PS417_22895 0.65 -1.3
4,962,795 - PS417_22895 0.71 -1.2
4,962,795 - PS417_22895 0.71 -1.6
4,962,848 + PS417_22895 0.77 +0.4
4,962,848 + PS417_22895 0.77 -0.1

Or see this region's nucleotide sequence