Experiment: Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_21890 and PS417_21895 are separated by 102 nucleotides PS417_21895 and PS417_21900 are separated by 124 nucleotides
PS417_21890: PS417_21890 - magnesium transporter CorA, at 4,750,473 to 4,751,495
_21890
PS417_21895: PS417_21895 - nuclease PIN, at 4,751,598 to 4,753,214
_21895
PS417_21900: PS417_21900 - allophanate hydrolase, at 4,753,339 to 4,754,313
_21900
Position (kb) 4751
4752
4753
4754 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 4750.814 kb on + strand, within PS417_21890 at 4750.948 kb on + strand, within PS417_21890 at 4751.032 kb on + strand, within PS417_21890 at 4751.491 kb on - strand at 4751.529 kb on + strand at 4751.529 kb on + strand at 4751.529 kb on + strand at 4751.529 kb on + strand at 4751.529 kb on + strand at 4751.530 kb on - strand at 4751.530 kb on - strand at 4751.883 kb on + strand, within PS417_21895 at 4751.883 kb on + strand, within PS417_21895 at 4751.883 kb on + strand, within PS417_21895 at 4751.883 kb on + strand, within PS417_21895 at 4751.883 kb on + strand, within PS417_21895 at 4751.884 kb on - strand, within PS417_21895 at 4751.884 kb on - strand, within PS417_21895 at 4751.884 kb on - strand, within PS417_21895 at 4752.312 kb on + strand, within PS417_21895 at 4752.313 kb on - strand, within PS417_21895 at 4752.313 kb on - strand, within PS417_21895 at 4752.600 kb on + strand, within PS417_21895 at 4752.600 kb on + strand, within PS417_21895 at 4752.601 kb on - strand, within PS417_21895 at 4752.741 kb on + strand, within PS417_21895 at 4752.742 kb on - strand, within PS417_21895 at 4752.742 kb on - strand, within PS417_21895 at 4752.742 kb on - strand, within PS417_21895 at 4752.742 kb on - strand, within PS417_21895 at 4752.742 kb on - strand, within PS417_21895 at 4752.972 kb on + strand, within PS417_21895 at 4752.972 kb on + strand, within PS417_21895 at 4752.973 kb on - strand, within PS417_21895 at 4752.973 kb on - strand, within PS417_21895 at 4753.032 kb on + strand, within PS417_21895 at 4753.032 kb on + strand, within PS417_21895 at 4753.032 kb on + strand, within PS417_21895 at 4753.032 kb on + strand at 4753.033 kb on - strand, within PS417_21895 at 4753.033 kb on - strand, within PS417_21895 at 4753.033 kb on - strand, within PS417_21895 at 4753.122 kb on - strand at 4753.922 kb on + strand, within PS417_21900 at 4753.922 kb on + strand, within PS417_21900 at 4753.923 kb on - strand, within PS417_21900 at 4753.980 kb on - strand, within PS417_21900 at 4753.980 kb on - strand, within PS417_21900 at 4754.210 kb on + strand, within PS417_21900
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days remove 4,750,814 + PS417_21890 0.33 +1.0 4,750,948 + PS417_21890 0.46 +1.2 4,751,032 + PS417_21890 0.55 -1.6 4,751,491 - +0.1 4,751,529 + -1.7 4,751,529 + +0.4 4,751,529 + -0.5 4,751,529 + +1.7 4,751,529 + -1.7 4,751,530 - +0.3 4,751,530 - +1.8 4,751,883 + PS417_21895 0.18 +1.8 4,751,883 + PS417_21895 0.18 +0.3 4,751,883 + PS417_21895 0.18 +1.0 4,751,883 + PS417_21895 0.18 +0.5 4,751,883 + PS417_21895 0.18 -0.4 4,751,884 - PS417_21895 0.18 +0.6 4,751,884 - PS417_21895 0.18 +0.8 4,751,884 - PS417_21895 0.18 -0.2 4,752,312 + PS417_21895 0.44 -0.7 4,752,313 - PS417_21895 0.44 +1.8 4,752,313 - PS417_21895 0.44 -0.2 4,752,600 + PS417_21895 0.62 +0.6 4,752,600 + PS417_21895 0.62 -0.2 4,752,601 - PS417_21895 0.62 +0.6 4,752,741 + PS417_21895 0.71 +0.1 4,752,742 - PS417_21895 0.71 -0.2 4,752,742 - PS417_21895 0.71 +1.9 4,752,742 - PS417_21895 0.71 -1.2 4,752,742 - PS417_21895 0.71 +5.1 4,752,742 - PS417_21895 0.71 +1.6 4,752,972 + PS417_21895 0.85 -0.0 4,752,972 + PS417_21895 0.85 -2.4 4,752,973 - PS417_21895 0.85 +0.9 4,752,973 - PS417_21895 0.85 -0.4 4,753,032 + PS417_21895 0.89 -0.1 4,753,032 + PS417_21895 0.89 +2.8 4,753,032 + PS417_21895 0.89 -0.3 4,753,032 + -0.4 4,753,033 - PS417_21895 0.89 -2.1 4,753,033 - PS417_21895 0.89 +0.1 4,753,033 - PS417_21895 0.89 +0.5 4,753,122 - +1.6 4,753,922 + PS417_21900 0.60 -0.7 4,753,922 + PS417_21900 0.60 +3.0 4,753,923 - PS417_21900 0.60 -0.7 4,753,980 - PS417_21900 0.66 +3.0 4,753,980 - PS417_21900 0.66 -2.5 4,754,210 + PS417_21900 0.89 -0.3
Or see this region's nucleotide sequence