Experiment: Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_21755 and PS417_21760 are separated by 8 nucleotides PS417_21760 and PS417_21765 are separated by 104 nucleotides PS417_21765 and PS417_21770 are separated by 296 nucleotides
PS417_21755: PS417_21755 - hypothetical protein, at 4,725,423 to 4,725,692
_21755
PS417_21760: PS417_21760 - hypothetical protein, at 4,725,701 to 4,726,072
_21760
PS417_21765: PS417_21765 - ribonucleotide-diphosphate reductase subunit beta, at 4,726,177 to 4,727,427
_21765
PS417_21770: PS417_21770 - HAD family hydrolase, at 4,727,724 to 4,728,377
_21770
Position (kb) 4726
4727
4728 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4725.250 kb on - strand at 4725.258 kb on - strand at 4725.258 kb on - strand at 4725.357 kb on - strand at 4725.412 kb on + strand at 4725.412 kb on + strand at 4725.412 kb on + strand at 4725.413 kb on - strand at 4725.413 kb on - strand at 4725.413 kb on - strand at 4725.413 kb on - strand at 4725.415 kb on - strand at 4725.415 kb on - strand at 4725.415 kb on - strand at 4725.417 kb on - strand at 4725.417 kb on - strand at 4725.417 kb on - strand at 4725.433 kb on + strand at 4725.433 kb on + strand at 4725.436 kb on + strand at 4725.500 kb on - strand, within PS417_21755 at 4725.500 kb on - strand, within PS417_21755 at 4725.531 kb on + strand, within PS417_21755 at 4725.531 kb on + strand, within PS417_21755 at 4725.532 kb on - strand, within PS417_21755 at 4725.532 kb on - strand, within PS417_21755 at 4725.537 kb on + strand, within PS417_21755 at 4725.537 kb on + strand at 4725.537 kb on + strand, within PS417_21755 at 4725.622 kb on - strand, within PS417_21755 at 4725.653 kb on + strand, within PS417_21755 at 4725.654 kb on - strand, within PS417_21755 at 4725.658 kb on - strand, within PS417_21755 at 4725.695 kb on - strand at 4725.703 kb on - strand at 4725.916 kb on - strand, within PS417_21760 at 4725.916 kb on - strand, within PS417_21760 at 4726.065 kb on - strand at 4726.221 kb on - strand at 4727.560 kb on + strand at 4727.561 kb on - strand at 4727.567 kb on - strand at 4727.577 kb on + strand at 4727.577 kb on + strand at 4727.577 kb on + strand at 4727.661 kb on + strand at 4727.661 kb on + strand at 4727.702 kb on + strand at 4727.702 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days remove 4,725,250 - -0.9 4,725,258 - +0.9 4,725,258 - +0.6 4,725,357 - -0.2 4,725,412 + +0.0 4,725,412 + -0.5 4,725,412 + +0.9 4,725,413 - -0.7 4,725,413 - -0.3 4,725,413 - +0.8 4,725,413 - +0.0 4,725,415 - +0.6 4,725,415 - -1.0 4,725,415 - -2.3 4,725,417 - -0.9 4,725,417 - -2.1 4,725,417 - +0.5 4,725,433 + -2.0 4,725,433 + -0.3 4,725,436 + +0.3 4,725,500 - PS417_21755 0.29 -1.5 4,725,500 - PS417_21755 0.29 -0.9 4,725,531 + PS417_21755 0.40 -1.6 4,725,531 + PS417_21755 0.40 +2.9 4,725,532 - PS417_21755 0.40 -1.8 4,725,532 - PS417_21755 0.40 -0.4 4,725,537 + PS417_21755 0.42 -1.0 4,725,537 + +0.6 4,725,537 + PS417_21755 0.42 +1.0 4,725,622 - PS417_21755 0.74 -0.6 4,725,653 + PS417_21755 0.85 -0.7 4,725,654 - PS417_21755 0.86 +2.3 4,725,658 - PS417_21755 0.87 -0.4 4,725,695 - -1.0 4,725,703 - +0.4 4,725,916 - PS417_21760 0.58 -1.2 4,725,916 - PS417_21760 0.58 +0.0 4,726,065 - -0.2 4,726,221 - -0.1 4,727,560 + -0.6 4,727,561 - -1.2 4,727,567 - +0.1 4,727,577 + +0.1 4,727,577 + +1.6 4,727,577 + -1.0 4,727,661 + +0.1 4,727,661 + -1.0 4,727,702 + -1.3 4,727,702 + +0.4
Or see this region's nucleotide sequence