Strain Fitness in Pseudomonas simiae WCS417 around PS417_19170

Experiment: Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
4,142,670	+		PS417_19165	0.60	-0.6
4,142,749	+		PS417_19165	0.64	+0.7
4,142,960	+		PS417_19165	0.72	-0.5
4,142,960	+		PS417_19165	0.72	+0.8
4,142,961	-		PS417_19165	0.72	-0.0
4,143,098	-		PS417_19165	0.78	+0.3
4,143,186	+		PS417_19165	0.82	+2.0
4,143,319	+		PS417_19165	0.87	-0.7
4,143,319	+		PS417_19165	0.87	-0.5
4,143,341	+		PS417_19165	0.88	-1.3
4,143,341	+		PS417_19165	0.88	+1.2
4,143,341	+		PS417_19165	0.88	+1.0
4,143,585	+				-0.7
4,143,724	+				-1.5
4,143,727	+				-0.3
4,143,727	+				+2.3
4,143,728	-				+1.8
4,143,728	-				+1.5
4,143,872	-				-0.2
4,143,872	-				-0.3
4,143,872	-				-0.1
4,143,872	-				+0.8
4,143,968	-				-0.6
4,143,968	-				-1.0
4,144,011	+				-1.1
4,144,118	+				-0.8
4,144,119	-				+0.7
4,144,119	-				+1.0
4,144,119	-				+1.5
4,144,126	+				-1.0
4,144,126	+				-0.2
4,144,126	+				+0.1
4,144,127	-				-0.0
4,144,127	-				+0.1
4,144,161	+		PS417_19170	0.10	+0.4
4,144,213	+		PS417_19170	0.11	-0.5
4,144,214	-				-0.5
4,144,214	-		PS417_19170	0.11	-0.1
4,144,214	-		PS417_19170	0.11	+0.0
4,144,216	+		PS417_19170	0.11	+0.5
4,144,217	-		PS417_19170	0.11	-0.8
4,144,217	-		PS417_19170	0.11	+1.1
4,144,359	+		PS417_19170	0.14	+0.2
4,144,408	-		PS417_19170	0.15	+0.8
4,144,624	-		PS417_19170	0.20	-1.0
4,144,898	-		PS417_19170	0.25	-0.2
4,144,906	-		PS417_19170	0.25	-1.9
4,144,961	+		PS417_19170	0.27	+0.7
4,145,021	+				+0.5
4,145,022	-		PS417_19170	0.28	+0.7
4,145,036	+		PS417_19170	0.28	-0.6
4,145,036	+		PS417_19170	0.28	+0.2
4,145,036	+		PS417_19170	0.28	+0.3
4,145,037	-		PS417_19170	0.28	+0.3
4,145,054	+		PS417_19170	0.28	+0.1
4,145,153	+		PS417_19170	0.30	+0.2
4,145,153	+		PS417_19170	0.30	-0.9
4,145,153	+		PS417_19170	0.30	+0.0
4,145,153	+		PS417_19170	0.30	+1.1
4,145,154	-		PS417_19170	0.31	-0.6
4,145,154	-		PS417_19170	0.31	-0.2
4,145,154	-		PS417_19170	0.31	+2.5
4,145,154	-		PS417_19170	0.31	-0.9
4,145,245	+		PS417_19170	0.32	+0.2
4,145,246	-		PS417_19170	0.32	+2.4
4,145,270	-		PS417_19170	0.33	-0.3
4,145,399	-		PS417_19170	0.36	+0.5
4,145,455	+		PS417_19170	0.37	+3.0
4,145,455	+		PS417_19170	0.37	-0.5
4,145,539	-		PS417_19170	0.38	+0.9
4,145,600	+		PS417_19170	0.40	-1.0
4,145,600	+		PS417_19170	0.40	+0.1
4,145,600	+		PS417_19170	0.40	+0.8
4,145,600	+		PS417_19170	0.40	+3.1
4,145,600	+		PS417_19170	0.40	+0.2
4,145,601	-		PS417_19170	0.40	-1.1
4,145,601	-		PS417_19170	0.40	+0.7
4,145,601	-		PS417_19170	0.40	-0.1
4,145,601	-		PS417_19170	0.40	+0.1
4,145,601	-		PS417_19170	0.40	-0.1
4,145,602	+		PS417_19170	0.40	+0.9
4,145,602	+		PS417_19170	0.40	+2.0
4,145,602	+		PS417_19170	0.40	-1.2
4,145,602	+		PS417_19170	0.40	+1.7
4,145,602	+		PS417_19170	0.40	-1.5
4,145,603	-		PS417_19170	0.40	+2.3
4,145,603	-				-1.0
4,145,603	-		PS417_19170	0.40	+0.6
4,145,603	-		PS417_19170	0.40	+0.9
4,145,603	-		PS417_19170	0.40	+0.3
4,145,604	+		PS417_19170	0.40	+1.5
4,145,604	+		PS417_19170	0.40	-0.1
4,145,604	+		PS417_19170	0.40	+0.1
4,145,605	-		PS417_19170	0.40	+0.2
4,145,605	-		PS417_19170	0.40	+0.5
4,145,605	-		PS417_19170	0.40	+1.4
4,145,605	-				-0.0
4,145,789	+		PS417_19170	0.44	-0.3
4,145,790	-		PS417_19170	0.44	+0.4
4,145,811	+		PS417_19170	0.44	-1.0
4,145,832	+		PS417_19170	0.44	-1.3
4,145,904	+		PS417_19170	0.46	+5.6
4,146,338	-		PS417_19170	0.55	-0.2
4,146,382	+		PS417_19170	0.56	+0.5
4,146,409	+		PS417_19170	0.56	+0.7
4,146,409	+		PS417_19170	0.56	+1.5
4,146,481	+		PS417_19170	0.58	+0.7
4,146,482	-		PS417_19170	0.58	+1.8
4,146,482	-		PS417_19170	0.58	+0.3
4,146,512	-		PS417_19170	0.58	-0.0
4,146,512	-				+1.1
4,146,512	-		PS417_19170	0.58	+1.1
4,146,535	+		PS417_19170	0.59	-0.0
4,146,536	-		PS417_19170	0.59	-0.8
4,146,553	+		PS417_19170	0.59	-1.0
4,146,644	-				+1.5
4,146,820	-		PS417_19170	0.65	-0.5
4,146,820	-				-0.0
4,147,265	+		PS417_19170	0.74	-0.2
4,147,266	-		PS417_19170	0.74	-0.0
4,147,363	+		PS417_19170	0.76	-1.8
4,147,363	+		PS417_19170	0.76	-0.5
4,147,450	-		PS417_19170	0.78	-0.8
4,147,450	-		PS417_19170	0.78	-0.0
4,147,724	-		PS417_19170	0.83	-1.2
4,147,747	-		PS417_19170	0.84	+1.0
4,147,747	-		PS417_19170	0.84	+0.5
4,147,763	-		PS417_19170	0.84	-0.2
4,147,763	-		PS417_19170	0.84	-0.9
4,147,796	-		PS417_19170	0.85	-2.1
4,147,807	+		PS417_19170	0.85	-0.6
4,147,807	+				-0.0
4,147,808	-		PS417_19170	0.85	-1.7
4,147,855	+		PS417_19170	0.86	-0.4
4,147,856	-		PS417_19170	0.86	-0.1
4,147,969	+		PS417_19170	0.88	-0.6
4,147,969	+		PS417_19170	0.88	+0.1
4,147,969	+		PS417_19170	0.88	-1.0
4,147,969	+		PS417_19170	0.88	+0.2
4,147,970	-		PS417_19170	0.88	-0.5
4,148,109	-				-0.0
4,148,227	+				+0.7
4,148,262	+				-0.3
4,148,386	+				+1.1
4,148,401	+				+1.0
4,148,549	+				-0.8
4,148,550	-				-0.0
4,148,691	+				+0.7
4,148,716	-				+0.1
4,148,786	+				-0.5
4,148,786	+				+0.1
4,148,825	-				-0.8
4,148,825	-				-0.4
4,148,825	-				-0.0
4,148,825	-				+0.3
4,148,827	+				-1.0
4,148,828	-				+0.2
4,148,848	+				-0.8
4,148,849	-				-0.4
4,148,849	-				-1.4
4,148,994	-				+0.6
4,148,994	-				-0.5
4,149,156	+				-0.6
4,149,157	-		PS417_19175	0.13	-0.9
4,149,166	-		PS417_19175	0.14	+0.7
4,149,273	+		PS417_19175	0.16	-0.8
4,149,273	+		PS417_19175	0.16	-1.0
4,149,373	-		PS417_19175	0.18	+0.2
4,149,440	-		PS417_19175	0.20	+1.3