Experiment: Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_08760 and PS417_08765 are separated by 9 nucleotides PS417_08765 and PS417_08770 are separated by 218 nucleotides PS417_08770 and PS417_08775 are separated by 129 nucleotides
PS417_08760: PS417_08760 - metalloprotease, at 1,905,253 to 1,906,815
_08760
PS417_08765: PS417_08765 - MFS transporter, at 1,906,825 to 1,907,979
_08765
PS417_08770: PS417_08770 - hypothetical protein, at 1,908,198 to 1,908,812
_08770
PS417_08775: PS417_08775 - thiosulfate transporter subunit, at 1,908,942 to 1,909,946
_08775
Position (kb) 1906
1907
1908 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6
7
8
9
10 at 1905.949 kb on + strand, within PS417_08760 at 1905.950 kb on - strand, within PS417_08760 at 1906.353 kb on - strand at 1906.508 kb on + strand, within PS417_08760 at 1906.934 kb on + strand at 1906.934 kb on + strand at 1906.934 kb on + strand at 1906.935 kb on - strand at 1906.991 kb on + strand, within PS417_08765 at 1906.991 kb on + strand, within PS417_08765 at 1906.992 kb on - strand, within PS417_08765 at 1907.033 kb on + strand, within PS417_08765 at 1907.033 kb on + strand, within PS417_08765 at 1907.033 kb on + strand, within PS417_08765 at 1907.033 kb on + strand, within PS417_08765 at 1907.034 kb on - strand, within PS417_08765 at 1907.059 kb on - strand, within PS417_08765 at 1907.129 kb on - strand, within PS417_08765 at 1907.190 kb on + strand, within PS417_08765 at 1907.426 kb on + strand, within PS417_08765 at 1907.427 kb on - strand, within PS417_08765 at 1907.927 kb on + strand at 1907.927 kb on + strand at 1907.928 kb on - strand at 1907.930 kb on + strand at 1907.930 kb on + strand at 1907.930 kb on + strand at 1907.931 kb on - strand at 1907.931 kb on - strand at 1908.001 kb on - strand at 1908.158 kb on + strand at 1908.158 kb on + strand at 1908.158 kb on + strand at 1908.158 kb on + strand at 1908.159 kb on - strand at 1908.159 kb on - strand at 1908.159 kb on - strand at 1908.159 kb on - strand at 1908.439 kb on - strand, within PS417_08770 at 1908.439 kb on - strand, within PS417_08770 at 1908.628 kb on - strand, within PS417_08770 at 1908.774 kb on - strand at 1908.810 kb on + strand at 1908.889 kb on + strand at 1908.889 kb on + strand at 1908.889 kb on + strand at 1908.944 kb on - strand at 1908.955 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days remove 1,905,949 + PS417_08760 0.45 -0.1 1,905,950 - PS417_08760 0.45 +0.2 1,906,353 - +0.6 1,906,508 + PS417_08760 0.80 +1.5 1,906,934 + +0.2 1,906,934 + +0.3 1,906,934 + +0.0 1,906,935 - -1.1 1,906,991 + PS417_08765 0.14 +2.1 1,906,991 + PS417_08765 0.14 +0.1 1,906,992 - PS417_08765 0.14 +0.8 1,907,033 + PS417_08765 0.18 +1.0 1,907,033 + PS417_08765 0.18 +0.9 1,907,033 + PS417_08765 0.18 +0.1 1,907,033 + PS417_08765 0.18 +0.8 1,907,034 - PS417_08765 0.18 -0.0 1,907,059 - PS417_08765 0.20 -0.2 1,907,129 - PS417_08765 0.26 +1.9 1,907,190 + PS417_08765 0.32 -1.0 1,907,426 + PS417_08765 0.52 -0.0 1,907,427 - PS417_08765 0.52 -0.8 1,907,927 + -1.2 1,907,927 + +0.3 1,907,928 - +0.2 1,907,930 + +0.1 1,907,930 + -0.0 1,907,930 + -0.1 1,907,931 - +0.6 1,907,931 - -0.6 1,908,001 - -0.5 1,908,158 + -0.6 1,908,158 + +0.2 1,908,158 + +0.4 1,908,158 + -0.4 1,908,159 - +0.2 1,908,159 - -0.0 1,908,159 - -2.1 1,908,159 - +0.0 1,908,439 - PS417_08770 0.39 -1.0 1,908,439 - PS417_08770 0.39 -1.6 1,908,628 - PS417_08770 0.70 -0.1 1,908,774 - +2.0 1,908,810 + +1.8 1,908,889 + +10.0 1,908,889 + -1.1 1,908,889 + -0.5 1,908,944 - -1.1 1,908,955 + +1.0
Or see this region's nucleotide sequence