Strain Fitness in Pseudomonas simiae WCS417 around PS417_08080

Experiment: Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_08070 and PS417_08075 overlap by 4 nucleotidesPS417_08075 and PS417_08080 overlap by 4 nucleotidesPS417_08080 and PS417_08085 are separated by 32 nucleotides PS417_08070: PS417_08070 - nickel ABC transporter permease, at 1,765,319 to 1,766,176 _08070 PS417_08075: PS417_08075 - methionine ABC transporter ATP-binding protein, at 1,766,173 to 1,767,129 _08075 PS417_08080: PS417_08080 - ABC transporter ATP-binding protein, at 1,767,126 to 1,768,097 _08080 PS417_08085: PS417_08085 - diguanylate cyclase, at 1,768,130 to 1,769,644 _08085 Position (kb) 1767 1768 1769Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1766.857 kb on + strand, within PS417_08075at 1766.857 kb on + strand, within PS417_08075at 1766.890 kb on + strand, within PS417_08075at 1766.891 kb on - strand, within PS417_08075at 1766.920 kb on + strand, within PS417_08075at 1766.921 kb on - strand, within PS417_08075at 1767.285 kb on - strand, within PS417_08080at 1767.285 kb on - strand, within PS417_08080at 1767.452 kb on + strand, within PS417_08080at 1767.453 kb on - strand, within PS417_08080at 1767.478 kb on + strand, within PS417_08080at 1767.478 kb on + strand, within PS417_08080at 1767.479 kb on - strand, within PS417_08080at 1767.479 kb on - strand, within PS417_08080at 1767.479 kb on - strand, within PS417_08080at 1767.481 kb on + strand, within PS417_08080at 1767.482 kb on - strand, within PS417_08080at 1767.482 kb on - strand, within PS417_08080at 1767.575 kb on + strand, within PS417_08080at 1767.810 kb on + strand, within PS417_08080at 1767.811 kb on - strand, within PS417_08080at 1767.811 kb on - strand, within PS417_08080at 1767.974 kb on + strand, within PS417_08080at 1768.166 kb on - strandat 1768.216 kb on - strandat 1768.304 kb on + strand, within PS417_08085at 1768.394 kb on + strand, within PS417_08085at 1768.662 kb on - strand, within PS417_08085at 1768.810 kb on + strand, within PS417_08085at 1768.983 kb on + strand, within PS417_08085at 1768.983 kb on + strandat 1768.984 kb on - strand, within PS417_08085at 1768.984 kb on - strand, within PS417_08085at 1768.984 kb on - strandat 1769.040 kb on - strand, within PS417_08085at 1769.060 kb on + strand, within PS417_08085at 1769.061 kb on - strand, within PS417_08085at 1769.066 kb on + strand, within PS417_08085at 1769.066 kb on + strand, within PS417_08085at 1769.094 kb on - strand, within PS417_08085

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
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1,766,857 + PS417_08075 0.71 -0.4
1,766,857 + PS417_08075 0.71 +0.7
1,766,890 + PS417_08075 0.75 -0.3
1,766,891 - PS417_08075 0.75 +0.0
1,766,920 + PS417_08075 0.78 -0.6
1,766,921 - PS417_08075 0.78 -0.4
1,767,285 - PS417_08080 0.16 -0.3
1,767,285 - PS417_08080 0.16 -2.2
1,767,452 + PS417_08080 0.34 +0.1
1,767,453 - PS417_08080 0.34 +0.8
1,767,478 + PS417_08080 0.36 +0.2
1,767,478 + PS417_08080 0.36 +0.4
1,767,479 - PS417_08080 0.36 -1.6
1,767,479 - PS417_08080 0.36 +0.6
1,767,479 - PS417_08080 0.36 -0.8
1,767,481 + PS417_08080 0.37 -0.4
1,767,482 - PS417_08080 0.37 -0.2
1,767,482 - PS417_08080 0.37 +0.3
1,767,575 + PS417_08080 0.46 +0.2
1,767,810 + PS417_08080 0.70 +4.3
1,767,811 - PS417_08080 0.70 +0.8
1,767,811 - PS417_08080 0.70 +1.3
1,767,974 + PS417_08080 0.87 -1.0
1,768,166 - +0.4
1,768,216 - -0.6
1,768,304 + PS417_08085 0.11 -0.1
1,768,394 + PS417_08085 0.17 -0.9
1,768,662 - PS417_08085 0.35 +0.1
1,768,810 + PS417_08085 0.45 -0.6
1,768,983 + PS417_08085 0.56 +2.0
1,768,983 + +1.6
1,768,984 - PS417_08085 0.56 +3.3
1,768,984 - PS417_08085 0.56 +1.6
1,768,984 - +2.6
1,769,040 - PS417_08085 0.60 -0.6
1,769,060 + PS417_08085 0.61 -0.2
1,769,061 - PS417_08085 0.61 -1.9
1,769,066 + PS417_08085 0.62 -0.3
1,769,066 + PS417_08085 0.62 +1.3
1,769,094 - PS417_08085 0.64 +0.3

Or see this region's nucleotide sequence