Strain Fitness in Pseudomonas simiae WCS417 around PS417_00790

Experiment: Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_00780 and PS417_00785 are separated by 272 nucleotidesPS417_00785 and PS417_00790 are separated by 40 nucleotidesPS417_00790 and PS417_00795 are separated by 41 nucleotidesPS417_00795 and PS417_00800 overlap by 4 nucleotides PS417_00780: PS417_00780 - hypothetical protein, at 174,656 to 175,267 _00780 PS417_00785: PS417_00785 - hypothetical protein, at 175,540 to 176,121 _00785 PS417_00790: PS417_00790 - curli production assembly protein CsgG, at 176,162 to 176,842 _00790 PS417_00795: PS417_00795 - lipoprotein, at 176,884 to 177,246 _00795 PS417_00800: PS417_00800 - lipoprotein, at 177,243 to 177,893 _00800 Position (kb) 176 177Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 175.200 kb on + strand, within PS417_00780at 175.201 kb on - strand, within PS417_00780at 175.201 kb on - strand, within PS417_00780at 175.322 kb on - strandat 175.360 kb on - strandat 175.360 kb on - strandat 175.397 kb on + strandat 175.425 kb on + strandat 175.425 kb on + strandat 175.426 kb on - strandat 175.506 kb on + strandat 175.506 kb on + strandat 175.556 kb on + strandat 175.603 kb on + strand, within PS417_00785at 175.603 kb on + strand, within PS417_00785at 175.604 kb on - strand, within PS417_00785at 175.606 kb on + strand, within PS417_00785at 175.606 kb on + strand, within PS417_00785at 175.606 kb on + strand, within PS417_00785at 175.607 kb on - strandat 175.607 kb on - strand, within PS417_00785at 175.607 kb on - strand, within PS417_00785at 175.819 kb on + strand, within PS417_00785at 175.819 kb on + strand, within PS417_00785at 175.820 kb on - strand, within PS417_00785at 175.820 kb on - strand, within PS417_00785at 175.820 kb on - strand, within PS417_00785at 175.820 kb on - strand, within PS417_00785at 175.832 kb on + strand, within PS417_00785at 175.906 kb on + strand, within PS417_00785at 175.907 kb on - strand, within PS417_00785at 175.907 kb on - strand, within PS417_00785at 176.062 kb on + strand, within PS417_00785at 176.062 kb on + strand, within PS417_00785at 176.062 kb on + strand, within PS417_00785at 176.063 kb on - strandat 176.063 kb on - strandat 176.150 kb on + strandat 176.151 kb on - strandat 176.151 kb on - strandat 176.289 kb on - strand, within PS417_00790at 176.342 kb on + strand, within PS417_00790at 176.342 kb on + strand, within PS417_00790at 176.342 kb on + strand, within PS417_00790at 176.342 kb on + strand, within PS417_00790at 176.343 kb on - strand, within PS417_00790at 176.615 kb on + strand, within PS417_00790at 176.666 kb on + strandat 176.667 kb on - strand, within PS417_00790at 176.667 kb on - strand, within PS417_00790at 176.667 kb on - strand, within PS417_00790at 176.877 kb on + strandat 176.877 kb on + strandat 176.877 kb on + strandat 176.877 kb on + strandat 176.877 kb on + strandat 176.878 kb on - strandat 176.878 kb on - strandat 176.966 kb on - strand, within PS417_00795at 176.966 kb on - strand, within PS417_00795at 177.001 kb on + strand, within PS417_00795at 177.002 kb on - strand, within PS417_00795at 177.119 kb on - strand, within PS417_00795at 177.119 kb on - strand, within PS417_00795at 177.197 kb on - strand, within PS417_00795at 177.240 kb on + strandat 177.241 kb on - strandat 177.322 kb on - strand, within PS417_00800at 177.331 kb on - strand, within PS417_00800at 177.331 kb on - strand, within PS417_00800at 177.331 kb on - strandat 177.403 kb on - strand, within PS417_00800at 177.448 kb on - strand, within PS417_00800at 177.448 kb on - strand, within PS417_00800at 177.451 kb on - strand, within PS417_00800at 177.573 kb on + strand, within PS417_00800at 177.573 kb on + strand, within PS417_00800at 177.574 kb on - strand, within PS417_00800at 177.574 kb on - strand, within PS417_00800at 177.603 kb on + strand, within PS417_00800at 177.604 kb on - strand, within PS417_00800at 177.604 kb on - strand, within PS417_00800at 177.604 kb on - strand, within PS417_00800at 177.604 kb on - strand, within PS417_00800at 177.604 kb on - strand, within PS417_00800

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
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175,200 + PS417_00780 0.89 -0.1
175,201 - PS417_00780 0.89 -1.4
175,201 - PS417_00780 0.89 +0.8
175,322 - +0.6
175,360 - +0.8
175,360 - -0.0
175,397 + +0.6
175,425 + +0.6
175,425 + +0.4
175,426 - -0.7
175,506 + +2.4
175,506 + -0.6
175,556 + +1.2
175,603 + PS417_00785 0.11 +1.6
175,603 + PS417_00785 0.11 -1.4
175,604 - PS417_00785 0.11 +2.4
175,606 + PS417_00785 0.11 +0.6
175,606 + PS417_00785 0.11 -0.3
175,606 + PS417_00785 0.11 +1.1
175,607 - -0.0
175,607 - PS417_00785 0.12 -1.0
175,607 - PS417_00785 0.12 +0.3
175,819 + PS417_00785 0.48 +0.1
175,819 + PS417_00785 0.48 +1.0
175,820 - PS417_00785 0.48 -0.4
175,820 - PS417_00785 0.48 +2.3
175,820 - PS417_00785 0.48 -1.6
175,820 - PS417_00785 0.48 +4.5
175,832 + PS417_00785 0.50 -0.1
175,906 + PS417_00785 0.63 -2.2
175,907 - PS417_00785 0.63 +0.6
175,907 - PS417_00785 0.63 +0.1
176,062 + PS417_00785 0.90 -0.0
176,062 + PS417_00785 0.90 -0.0
176,062 + PS417_00785 0.90 +1.0
176,063 - +0.6
176,063 - -0.4
176,150 + -1.4
176,151 - +0.2
176,151 - -1.8
176,289 - PS417_00790 0.19 -0.2
176,342 + PS417_00790 0.26 -0.1
176,342 + PS417_00790 0.26 -1.4
176,342 + PS417_00790 0.26 +0.1
176,342 + PS417_00790 0.26 -0.0
176,343 - PS417_00790 0.27 -0.4
176,615 + PS417_00790 0.67 +0.2
176,666 + -1.3
176,667 - PS417_00790 0.74 +2.6
176,667 - PS417_00790 0.74 +0.6
176,667 - PS417_00790 0.74 +1.4
176,877 + +0.3
176,877 + +0.7
176,877 + -0.0
176,877 + +2.1
176,877 + -1.6
176,878 - +3.5
176,878 - -0.0
176,966 - PS417_00795 0.23 +0.2
176,966 - PS417_00795 0.23 +1.6
177,001 + PS417_00795 0.32 +0.0
177,002 - PS417_00795 0.33 -0.4
177,119 - PS417_00795 0.65 +0.2
177,119 - PS417_00795 0.65 -0.8
177,197 - PS417_00795 0.86 -1.3
177,240 + -1.6
177,241 - -0.2
177,322 - PS417_00800 0.12 -0.2
177,331 - PS417_00800 0.14 -0.2
177,331 - PS417_00800 0.14 -0.0
177,331 - +2.6
177,403 - PS417_00800 0.25 +0.3
177,448 - PS417_00800 0.31 -1.1
177,448 - PS417_00800 0.31 -0.8
177,451 - PS417_00800 0.32 +0.6
177,573 + PS417_00800 0.51 -1.6
177,573 + PS417_00800 0.51 -0.6
177,574 - PS417_00800 0.51 -0.3
177,574 - PS417_00800 0.51 -0.9
177,603 + PS417_00800 0.55 -1.2
177,604 - PS417_00800 0.55 -0.3
177,604 - PS417_00800 0.55 -2.7
177,604 - PS417_00800 0.55 +0.9
177,604 - PS417_00800 0.55 +1.3
177,604 - PS417_00800 0.55 +0.4

Or see this region's nucleotide sequence