Experiment: Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_00060 and PS417_00065 are separated by 81 nucleotides PS417_00065 and PS417_00070 are separated by 40 nucleotides PS417_00070 and PS417_00075 are separated by 136 nucleotides PS417_00075 and PS417_00080 are separated by 17 nucleotides
PS417_00060: PS417_00060 - glycyl-tRNA synthetase, at 14,341 to 15,294
_00060
PS417_00065: PS417_00065 - 3-methyladenine DNA glycosylase, at 15,376 to 15,933
_00065
PS417_00070: PS417_00070 - lipid A biosynthesis lauroyl acyltransferase, at 15,974 to 16,861
_00070
PS417_00075: PS417_00075 - hypothetical protein, at 16,998 to 17,309
_00075
PS417_00080: PS417_00080 - potassium transporter peripheral membrane component, at 17,327 to 18,700
_00080
Position (kb) 15
16
17 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 15.309 kb on - strand at 15.375 kb on + strand at 15.412 kb on + strand at 15.412 kb on + strand at 15.412 kb on + strand at 15.421 kb on + strand at 15.422 kb on - strand at 15.524 kb on + strand, within PS417_00065 at 15.767 kb on + strand, within PS417_00065 at 16.856 kb on + strand at 16.924 kb on + strand at 16.924 kb on + strand at 16.925 kb on - strand at 17.079 kb on + strand, within PS417_00075 at 17.080 kb on - strand, within PS417_00075 at 17.165 kb on - strand, within PS417_00075 at 17.165 kb on - strand, within PS417_00075 at 17.268 kb on - strand, within PS417_00075 at 17.701 kb on - strand, within PS417_00080 at 17.701 kb on - strand, within PS417_00080 at 17.767 kb on + strand, within PS417_00080 at 17.767 kb on + strand, within PS417_00080 at 17.768 kb on - strand, within PS417_00080 at 17.768 kb on - strand, within PS417_00080 at 17.768 kb on - strand, within PS417_00080 at 17.768 kb on - strand, within PS417_00080 at 17.768 kb on - strand, within PS417_00080
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days remove 15,309 - -2.0 15,375 + -1.6 15,412 + +1.6 15,412 + +0.8 15,412 + -1.4 15,421 + -0.8 15,422 - +1.6 15,524 + PS417_00065 0.27 +3.0 15,767 + PS417_00065 0.70 +0.1 16,856 + +0.6 16,924 + +1.2 16,924 + +0.4 16,925 - -1.4 17,079 + PS417_00075 0.26 -0.5 17,080 - PS417_00075 0.26 -1.0 17,165 - PS417_00075 0.54 -0.0 17,165 - PS417_00075 0.54 +0.2 17,268 - PS417_00075 0.87 -1.0 17,701 - PS417_00080 0.27 -0.9 17,701 - PS417_00080 0.27 -0.2 17,767 + PS417_00080 0.32 -2.6 17,767 + PS417_00080 0.32 -0.2 17,768 - PS417_00080 0.32 +0.1 17,768 - PS417_00080 0.32 +0.2 17,768 - PS417_00080 0.32 +0.6 17,768 - PS417_00080 0.32 -2.2 17,768 - PS417_00080 0.32 -1.2
Or see this region's nucleotide sequence