Experiment: Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_02260 and PS417_02265 are separated by 118 nucleotides PS417_02265 and PS417_02270 are separated by 675 nucleotides
PS417_02260: PS417_02260 - serine/threonine protein kinase, at 513,857 to 515,296
_02260
PS417_02265: PS417_02265 - TonB-dependent receptor, at 515,415 to 517,499
_02265
PS417_02270: PS417_02270 - carbamoyltransferase, at 518,175 to 519,932
_02270
Position (kb) 515
516
517
518 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 515.333 kb on + strand at 515.348 kb on - strand at 515.350 kb on + strand at 515.350 kb on + strand at 515.350 kb on + strand at 515.350 kb on + strand at 515.350 kb on + strand at 515.351 kb on - strand at 515.351 kb on - strand at 515.473 kb on + strand at 515.473 kb on + strand at 515.473 kb on + strand at 515.473 kb on + strand at 515.474 kb on - strand at 515.477 kb on - strand at 515.515 kb on + strand at 515.600 kb on + strand at 515.601 kb on - strand at 515.650 kb on + strand, within PS417_02265 at 515.650 kb on + strand, within PS417_02265 at 515.651 kb on - strand, within PS417_02265 at 515.991 kb on - strand, within PS417_02265 at 515.991 kb on - strand, within PS417_02265 at 516.012 kb on + strand, within PS417_02265 at 516.026 kb on - strand, within PS417_02265 at 516.136 kb on + strand, within PS417_02265 at 516.155 kb on + strand, within PS417_02265 at 516.163 kb on + strand, within PS417_02265 at 516.360 kb on + strand, within PS417_02265 at 516.581 kb on - strand, within PS417_02265 at 516.608 kb on - strand, within PS417_02265 at 516.608 kb on - strand, within PS417_02265 at 516.695 kb on - strand, within PS417_02265 at 516.715 kb on - strand, within PS417_02265 at 516.736 kb on + strand, within PS417_02265 at 516.736 kb on + strand, within PS417_02265 at 516.736 kb on + strand, within PS417_02265 at 516.793 kb on + strand, within PS417_02265 at 516.793 kb on + strand, within PS417_02265 at 517.060 kb on + strand, within PS417_02265 at 517.060 kb on + strand, within PS417_02265 at 517.246 kb on + strand, within PS417_02265 at 517.247 kb on - strand, within PS417_02265 at 517.247 kb on - strand, within PS417_02265 at 517.464 kb on + strand at 517.532 kb on + strand at 517.533 kb on - strand at 517.631 kb on - strand at 517.633 kb on + strand at 517.633 kb on + strand at 517.672 kb on + strand at 517.689 kb on + strand at 517.689 kb on + strand at 517.705 kb on + strand at 517.706 kb on - strand at 517.714 kb on + strand at 517.715 kb on - strand at 517.746 kb on + strand at 517.746 kb on + strand at 517.747 kb on - strand at 517.994 kb on + strand at 517.995 kb on - strand at 518.027 kb on - strand at 518.079 kb on - strand at 518.147 kb on + strand at 518.147 kb on + strand at 518.156 kb on + strand at 518.156 kb on + strand at 518.235 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days remove 515,333 + -0.3 515,348 - +0.5 515,350 + -0.8 515,350 + -1.1 515,350 + -0.7 515,350 + +1.0 515,350 + -0.0 515,351 - -0.6 515,351 - -1.7 515,473 + -0.7 515,473 + -0.9 515,473 + -1.8 515,473 + -0.7 515,474 - +0.4 515,477 - +0.9 515,515 + -0.8 515,600 + +0.3 515,601 - -0.8 515,650 + PS417_02265 0.11 +0.0 515,650 + PS417_02265 0.11 +5.7 515,651 - PS417_02265 0.11 +0.0 515,991 - PS417_02265 0.28 -1.0 515,991 - PS417_02265 0.28 +0.9 516,012 + PS417_02265 0.29 -1.0 516,026 - PS417_02265 0.29 +0.2 516,136 + PS417_02265 0.35 -0.1 516,155 + PS417_02265 0.35 -1.3 516,163 + PS417_02265 0.36 +1.5 516,360 + PS417_02265 0.45 +4.3 516,581 - PS417_02265 0.56 -0.3 516,608 - PS417_02265 0.57 -0.4 516,608 - PS417_02265 0.57 -0.4 516,695 - PS417_02265 0.61 +0.4 516,715 - PS417_02265 0.62 +0.2 516,736 + PS417_02265 0.63 -0.8 516,736 + PS417_02265 0.63 +0.1 516,736 + PS417_02265 0.63 -0.3 516,793 + PS417_02265 0.66 -1.3 516,793 + PS417_02265 0.66 -1.7 517,060 + PS417_02265 0.79 -0.3 517,060 + PS417_02265 0.79 +2.5 517,246 + PS417_02265 0.88 -0.0 517,247 - PS417_02265 0.88 +0.4 517,247 - PS417_02265 0.88 +1.5 517,464 + -1.7 517,532 + -0.9 517,533 - -0.1 517,631 - +1.3 517,633 + +1.8 517,633 + +1.3 517,672 + -0.5 517,689 + -0.7 517,689 + +0.2 517,705 + -0.2 517,706 - +1.0 517,714 + -0.4 517,715 - +0.9 517,746 + +0.3 517,746 + -0.4 517,747 - -1.0 517,994 + -1.0 517,995 - +0.3 518,027 - -0.7 518,079 - +1.3 518,147 + -0.1 518,147 + -0.2 518,156 + -0.5 518,156 + +0.0 518,235 + -0.7
Or see this region's nucleotide sequence