Experiment: Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_21105 and PS417_21110 are separated by 229 nucleotides PS417_21110 and PS417_21115 overlap by 1 nucleotides PS417_21115 and PS417_21120 are separated by 122 nucleotides
PS417_21105: PS417_21105 - aminodeoxychorismate synthase, at 4,593,632 to 4,594,975
_21105
PS417_21110: PS417_21110 - hypothetical protein, at 4,595,205 to 4,595,507
_21110
PS417_21115: PS417_21115 - transcriptional regulator, at 4,595,507 to 4,595,863
_21115
PS417_21120: PS417_21120 - phosphoserine phosphatase, at 4,595,986 to 4,596,603
_21120
Position (kb) 4595
4596 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4594.214 kb on + strand, within PS417_21105 at 4594.215 kb on - strand, within PS417_21105 at 4594.215 kb on - strand, within PS417_21105 at 4594.778 kb on + strand, within PS417_21105 at 4594.796 kb on + strand, within PS417_21105 at 4594.866 kb on + strand at 4594.867 kb on - strand at 4594.867 kb on - strand at 4594.954 kb on - strand at 4595.044 kb on - strand at 4595.128 kb on - strand at 4595.128 kb on - strand at 4595.133 kb on + strand at 4595.213 kb on - strand at 4595.237 kb on - strand, within PS417_21110 at 4595.237 kb on - strand, within PS417_21110 at 4595.259 kb on + strand, within PS417_21110 at 4595.292 kb on + strand, within PS417_21110 at 4595.348 kb on + strand, within PS417_21110 at 4595.361 kb on - strand, within PS417_21110 at 4595.452 kb on + strand, within PS417_21110 at 4595.452 kb on + strand, within PS417_21110 at 4595.452 kb on + strand, within PS417_21110 at 4595.453 kb on - strand at 4595.453 kb on - strand, within PS417_21110 at 4595.479 kb on - strand at 4595.521 kb on + strand at 4595.521 kb on + strand at 4595.523 kb on + strand at 4595.831 kb on - strand at 4595.831 kb on - strand at 4595.837 kb on + strand at 4595.838 kb on - strand at 4595.867 kb on + strand at 4595.868 kb on - strand at 4595.878 kb on + strand at 4596.045 kb on + strand at 4596.045 kb on + strand at 4596.045 kb on + strand at 4596.046 kb on - strand at 4596.143 kb on + strand, within PS417_21120 at 4596.144 kb on - strand, within PS417_21120 at 4596.144 kb on - strand, within PS417_21120 at 4596.173 kb on + strand, within PS417_21120 at 4596.231 kb on - strand, within PS417_21120 at 4596.488 kb on + strand, within PS417_21120 at 4596.488 kb on + strand, within PS417_21120 at 4596.489 kb on - strand, within PS417_21120 at 4596.507 kb on + strand, within PS417_21120
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days remove 4,594,214 + PS417_21105 0.43 -0.1 4,594,215 - PS417_21105 0.43 +0.9 4,594,215 - PS417_21105 0.43 +0.0 4,594,778 + PS417_21105 0.85 -1.1 4,594,796 + PS417_21105 0.87 -0.4 4,594,866 + +2.2 4,594,867 - -0.7 4,594,867 - +0.4 4,594,954 - +0.1 4,595,044 - +0.2 4,595,128 - -0.2 4,595,128 - -0.8 4,595,133 + +0.2 4,595,213 - -1.0 4,595,237 - PS417_21110 0.11 +0.8 4,595,237 - PS417_21110 0.11 +0.3 4,595,259 + PS417_21110 0.18 +2.5 4,595,292 + PS417_21110 0.29 +0.6 4,595,348 + PS417_21110 0.47 +1.3 4,595,361 - PS417_21110 0.51 +0.1 4,595,452 + PS417_21110 0.82 +0.2 4,595,452 + PS417_21110 0.82 -1.0 4,595,452 + PS417_21110 0.82 +0.1 4,595,453 - +0.2 4,595,453 - PS417_21110 0.82 -0.2 4,595,479 - -0.2 4,595,521 + -1.1 4,595,521 + -0.4 4,595,523 + -0.2 4,595,831 - -1.8 4,595,831 - -0.2 4,595,837 + +1.2 4,595,838 - +1.0 4,595,867 + -1.2 4,595,868 - -2.0 4,595,878 + -0.4 4,596,045 + -0.4 4,596,045 + -1.2 4,596,045 + +0.3 4,596,046 - -2.9 4,596,143 + PS417_21120 0.25 +0.0 4,596,144 - PS417_21120 0.26 -0.4 4,596,144 - PS417_21120 0.26 -0.9 4,596,173 + PS417_21120 0.30 -0.1 4,596,231 - PS417_21120 0.40 -2.1 4,596,488 + PS417_21120 0.81 -0.6 4,596,488 + PS417_21120 0.81 -0.4 4,596,489 - PS417_21120 0.81 +1.2 4,596,507 + PS417_21120 0.84 -0.3
Or see this region's nucleotide sequence