Strain Fitness in Pseudomonas simiae WCS417 around PS417_07780

Experiment: Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
1,708,790	-		PS417_07770	0.58	-0.5
1,708,898	+				+1.5
1,708,898	+				-0.4
1,708,899	-				+0.2
1,708,903	-				-0.8
1,708,903	-				+0.6
1,708,911	+				-1.6
1,708,913	+				+0.2
1,709,107	-		PS417_07775	0.11	-1.3
1,709,115	+		PS417_07775	0.13	+0.6
1,709,115	+		PS417_07775	0.13	-0.3
1,709,115	+		PS417_07775	0.13	+0.7
1,709,115	+		PS417_07775	0.13	+1.6
1,709,115	+				+0.5
1,709,115	+		PS417_07775	0.13	+0.1
1,709,115	+		PS417_07775	0.13	-0.0
1,709,116	-		PS417_07775	0.13	+0.7
1,709,116	-		PS417_07775	0.13	-1.0
1,709,116	-		PS417_07775	0.13	+0.3
1,709,136	-		PS417_07775	0.16	+0.5
1,709,168	+		PS417_07775	0.21	+0.3
1,709,186	+		PS417_07775	0.24	-1.1
1,709,186	+		PS417_07775	0.24	-0.3
1,709,187	-		PS417_07775	0.25	+0.3
1,709,187	-		PS417_07775	0.25	-2.4
1,709,235	+		PS417_07775	0.33	-0.0
1,709,237	+		PS417_07775	0.33	+0.1
1,709,237	+		PS417_07775	0.33	-0.9
1,709,237	+		PS417_07775	0.33	-0.4
1,709,237	+		PS417_07775	0.33	-0.5
1,709,237	+		PS417_07775	0.33	-0.2
1,709,238	-		PS417_07775	0.33	+0.2
1,709,238	-		PS417_07775	0.33	+0.6
1,709,247	-		PS417_07775	0.34	-0.4
1,709,249	+		PS417_07775	0.35	+0.9
1,709,249	+		PS417_07775	0.35	-0.4
1,709,250	-		PS417_07775	0.35	-0.1
1,709,250	-		PS417_07775	0.35	-2.6
1,709,250	-		PS417_07775	0.35	-1.3
1,709,252	+		PS417_07775	0.35	+0.8
1,709,252	+		PS417_07775	0.35	-0.3
1,709,252	+		PS417_07775	0.35	+0.8
1,709,253	-		PS417_07775	0.35	+0.2
1,709,253	-		PS417_07775	0.35	+0.0
1,709,253	-		PS417_07775	0.35	+0.2
1,709,281	+		PS417_07775	0.40	+1.8
1,709,282	-		PS417_07775	0.40	+0.2
1,709,349	+		PS417_07775	0.51	+0.9
1,709,350	-		PS417_07775	0.51	-0.0
1,709,350	-		PS417_07775	0.51	+0.3
1,709,450	+				+2.8
1,709,574	-		PS417_07775	0.88	-0.3
1,709,574	-		PS417_07775	0.88	-0.2
1,709,574	-		PS417_07775	0.88	-1.0
1,709,574	-		PS417_07775	0.88	-0.7
1,709,587	+				-0.6
1,709,587	+				-1.0
1,709,588	-				-2.1
1,709,588	-				+1.6
1,709,588	-				+0.6
1,709,635	-				+0.8
1,709,635	-				-0.4
1,709,635	-				+0.2
1,709,869	-		PS417_07780	0.22	-1.3
1,709,906	+		PS417_07780	0.27	+0.9
1,709,962	+		PS417_07780	0.35	+0.3
1,709,963	-		PS417_07780	0.35	-0.8
1,709,963	-		PS417_07780	0.35	-0.0
1,709,980	+		PS417_07780	0.37	-0.1
1,709,981	-		PS417_07780	0.37	+0.4
1,709,983	+		PS417_07780	0.37	-0.9
1,709,983	+		PS417_07780	0.37	+0.3
1,709,984	-		PS417_07780	0.38	-1.1
1,710,029	+		PS417_07780	0.43	+6.2
1,710,030	-		PS417_07780	0.44	+0.0
1,710,074	-		PS417_07780	0.49	-0.7
1,710,093	+		PS417_07780	0.52	+3.8
1,710,093	+		PS417_07780	0.52	+0.3
1,710,186	+		PS417_07780	0.64	-0.3
1,710,186	+		PS417_07780	0.64	+0.1
1,710,186	+		PS417_07780	0.64	+0.3
1,710,186	+		PS417_07780	0.64	-0.3
1,710,187	-		PS417_07780	0.64	+0.4
1,710,187	-		PS417_07780	0.64	+0.9
1,710,194	+		PS417_07780	0.65	-0.4
1,710,194	+		PS417_07780	0.65	-0.7
1,710,194	+		PS417_07780	0.65	-0.8
1,710,195	-		PS417_07780	0.65	-0.3
1,710,195	-		PS417_07780	0.65	-1.0
1,710,195	-		PS417_07780	0.65	+0.2
1,710,195	-		PS417_07780	0.65	+0.2
1,710,195	-		PS417_07780	0.65	+0.8
1,710,195	-		PS417_07780	0.65	-0.6
1,710,195	-		PS417_07780	0.65	-0.8
1,710,239	+		PS417_07780	0.71	+1.4
1,710,239	+		PS417_07780	0.71	+0.4
1,710,240	-		PS417_07780	0.71	+2.3
1,710,240	-		PS417_07780	0.71	-0.5
1,710,295	+		PS417_07780	0.79	-0.1
1,710,297	+		PS417_07780	0.79	+0.8
1,710,297	+		PS417_07780	0.79	+0.9
1,710,298	-		PS417_07780	0.79	+0.6
1,710,307	+		PS417_07780	0.80	+0.9
1,710,372	+		PS417_07780	0.89	-0.2
1,710,372	+		PS417_07780	0.89	+2.4
1,710,372	+		PS417_07780	0.89	-0.2
1,710,372	+		PS417_07780	0.89	-1.7
1,710,372	+		PS417_07780	0.89	+0.2
1,710,373	-		PS417_07780	0.89	-2.4
1,710,373	-		PS417_07780	0.89	-0.1
1,710,373	-		PS417_07780	0.89	-0.0
1,710,383	+				-0.6
1,710,385	+				+0.1
1,710,385	+				+0.5
1,710,386	-				-0.3
1,710,429	+				+1.6
1,710,429	+				-0.5
1,710,430	-				+0.7
1,710,430	-				+0.5
1,710,430	-				-0.5
1,710,438	+				-1.6
1,710,439	-				+0.2
1,710,439	-				+0.9
1,710,483	+				+2.2
1,710,484	-				-0.8
1,710,665	+		PS417_07785	0.14	-0.0
1,710,665	+		PS417_07785	0.14	+0.1
1,710,697	-		PS417_07785	0.16	-1.0
1,710,697	-		PS417_07785	0.16	-2.1
1,710,988	-		PS417_07785	0.39	-0.4
1,710,988	-		PS417_07785	0.39	+0.8
1,711,005	+		PS417_07785	0.40	-0.6
1,711,094	+		PS417_07785	0.47	-0.3
1,711,118	-		PS417_07785	0.49	-0.4
1,711,157	+		PS417_07785	0.52	+0.2
1,711,158	-		PS417_07785	0.52	-0.2
1,711,158	-		PS417_07785	0.52	-0.6
1,711,160	-		PS417_07785	0.52	-0.4
1,711,188	+		PS417_07785	0.54	+0.4
1,711,188	+		PS417_07785	0.54	+1.6
1,711,189	-				+0.6
1,711,192	+		PS417_07785	0.55	-0.1
1,711,192	+		PS417_07785	0.55	-0.2
1,711,192	+		PS417_07785	0.55	-0.2
1,711,193	-		PS417_07785	0.55	-0.4
1,711,193	-		PS417_07785	0.55	+3.4
1,711,193	-		PS417_07785	0.55	+0.3
1,711,243	-		PS417_07785	0.58	+1.2
1,711,290	+		PS417_07785	0.62	-0.6
1,711,290	+		PS417_07785	0.62	+1.2
1,711,291	-		PS417_07785	0.62	-1.1
1,711,293	+		PS417_07785	0.62	-0.4
1,711,293	+		PS417_07785	0.62	-0.4
1,711,294	-		PS417_07785	0.62	-0.2
1,711,294	-		PS417_07785	0.62	-0.4