Experiment: Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_02885 and PS417_02890 are separated by 262 nucleotides PS417_02890 and PS417_02895 overlap by 4 nucleotides PS417_02895 and PS417_02900 are separated by 38 nucleotides
PS417_02885: PS417_02885 - hypothetical protein, at 659,193 to 659,588
_02885
PS417_02890: PS417_02890 - cobalt-precorrin-6X reductase, at 659,851 to 660,570
_02890
PS417_02895: PS417_02895 - precorrin-6Y C5,15-methyltransferase, at 660,567 to 661,772
_02895
PS417_02900: PS417_02900 - oxidoreductase, at 661,811 to 663,157
_02900
Position (kb) 660
661
662 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 659.629 kb on - strand at 659.651 kb on - strand at 659.651 kb on - strand at 659.651 kb on - strand at 659.743 kb on - strand at 659.743 kb on - strand at 659.743 kb on - strand at 660.494 kb on + strand, within PS417_02890 at 660.494 kb on + strand, within PS417_02890 at 660.494 kb on + strand, within PS417_02890 at 660.498 kb on + strand, within PS417_02890 at 660.498 kb on + strand, within PS417_02890 at 660.498 kb on + strand, within PS417_02890 at 660.499 kb on - strand at 660.499 kb on - strand at 660.517 kb on - strand at 661.334 kb on + strand, within PS417_02895 at 661.334 kb on + strand, within PS417_02895 at 661.532 kb on - strand, within PS417_02895 at 661.676 kb on + strand at 661.750 kb on - strand at 661.750 kb on - strand at 661.772 kb on + strand at 661.772 kb on + strand at 661.773 kb on - strand at 661.777 kb on - strand at 661.777 kb on - strand at 661.777 kb on - strand at 661.777 kb on - strand at 661.777 kb on - strand at 661.834 kb on - strand at 661.834 kb on - strand at 661.892 kb on - strand at 662.027 kb on + strand, within PS417_02900 at 662.651 kb on + strand, within PS417_02900
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days remove 659,629 - +0.6 659,651 - -1.1 659,651 - +2.0 659,651 - +0.0 659,743 - -1.3 659,743 - -1.3 659,743 - -0.6 660,494 + PS417_02890 0.89 +0.4 660,494 + PS417_02890 0.89 -0.2 660,494 + PS417_02890 0.89 -1.6 660,498 + PS417_02890 0.90 -1.0 660,498 + PS417_02890 0.90 -0.7 660,498 + PS417_02890 0.90 -1.4 660,499 - -0.9 660,499 - -0.4 660,517 - +0.4 661,334 + PS417_02895 0.64 +5.7 661,334 + PS417_02895 0.64 -0.6 661,532 - PS417_02895 0.80 +0.4 661,676 + -1.4 661,750 - -0.8 661,750 - -1.9 661,772 + -0.2 661,772 + -0.4 661,773 - +1.0 661,777 - +0.1 661,777 - -0.4 661,777 - -0.8 661,777 - -0.0 661,777 - -1.3 661,834 - +0.0 661,834 - -0.6 661,892 - -2.0 662,027 + PS417_02900 0.16 +0.6 662,651 + PS417_02900 0.62 -1.0
Or see this region's nucleotide sequence