Experiment: Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_00930 and PS417_00935 are separated by 158 nucleotides PS417_00935 and PS417_00940 are separated by 13 nucleotides PS417_00940 and PS417_00945 are separated by 3 nucleotides
PS417_00930: PS417_00930 - ABC transporter permease, at 208,404 to 209,414
_00930
PS417_00935: PS417_00935 - sulfate ABC transporter permease, at 209,573 to 210,391
_00935
PS417_00940: PS417_00940 - sulfate ABC transporter permease, at 210,405 to 211,277
_00940
PS417_00945: PS417_00945 - sulfate ABC transporter ATP-binding protein, at 211,281 to 212,261
_00945
Position (kb) 210
211
212 Strain fitness (log2 ratio) -1
0
1 at 209.490 kb on + strand at 209.491 kb on - strand at 209.572 kb on + strand at 209.572 kb on + strand at 209.573 kb on - strand at 209.624 kb on + strand at 209.636 kb on + strand at 209.652 kb on + strand at 209.679 kb on + strand, within PS417_00935 at 209.925 kb on - strand, within PS417_00935 at 209.981 kb on + strand, within PS417_00935 at 209.983 kb on + strand, within PS417_00935 at 210.203 kb on + strand, within PS417_00935 at 210.287 kb on + strand, within PS417_00935 at 210.288 kb on - strand, within PS417_00935 at 210.288 kb on - strand, within PS417_00935 at 210.288 kb on - strand, within PS417_00935 at 210.477 kb on - strand at 210.696 kb on + strand, within PS417_00940 at 210.697 kb on - strand, within PS417_00940 at 210.777 kb on + strand, within PS417_00940 at 210.777 kb on + strand, within PS417_00940 at 211.152 kb on + strand, within PS417_00940 at 211.153 kb on - strand, within PS417_00940 at 211.153 kb on - strand, within PS417_00940 at 211.153 kb on - strand, within PS417_00940 at 211.242 kb on - strand at 211.242 kb on - strand at 211.275 kb on + strand at 211.275 kb on + strand at 211.275 kb on + strand at 211.276 kb on - strand at 211.276 kb on - strand at 211.713 kb on - strand, within PS417_00945 at 211.713 kb on - strand, within PS417_00945 at 211.980 kb on + strand, within PS417_00945
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days remove 209,490 + -0.3 209,491 - +0.1 209,572 + -0.9 209,572 + +0.2 209,573 - +0.1 209,624 + -1.0 209,636 + -1.0 209,652 + -0.1 209,679 + PS417_00935 0.13 +0.1 209,925 - PS417_00935 0.43 +0.4 209,981 + PS417_00935 0.50 +0.5 209,983 + PS417_00935 0.50 +0.6 210,203 + PS417_00935 0.77 -1.0 210,287 + PS417_00935 0.87 -0.0 210,288 - PS417_00935 0.87 -0.6 210,288 - PS417_00935 0.87 -1.2 210,288 - PS417_00935 0.87 -1.2 210,477 - -0.9 210,696 + PS417_00940 0.33 -1.4 210,697 - PS417_00940 0.33 +0.0 210,777 + PS417_00940 0.43 -0.7 210,777 + PS417_00940 0.43 +1.0 211,152 + PS417_00940 0.86 -0.6 211,153 - PS417_00940 0.86 -1.0 211,153 - PS417_00940 0.86 -0.5 211,153 - PS417_00940 0.86 -0.8 211,242 - +0.2 211,242 - -0.0 211,275 + -0.9 211,275 + +1.1 211,275 + +0.2 211,276 - -0.1 211,276 - +0.5 211,713 - PS417_00945 0.44 -1.3 211,713 - PS417_00945 0.44 -0.4 211,980 + PS417_00945 0.71 -0.6
Or see this region's nucleotide sequence