Experiment: Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_26595 and PS417_26600 overlap by 7 nucleotides PS417_26600 and PS417_26605 overlap by 4 nucleotides PS417_26605 and PS417_26610 overlap by 8 nucleotides PS417_26610 and PS417_26615 overlap by 1 nucleotides
PS417_26595: PS417_26595 - phosphoribosyl-dephospho-CoA transferase, at 5,749,832 to 5,750,419
_26595
PS417_26600: PS417_26600 - malonate decarboxylase subunit gamma, at 5,750,413 to 5,751,183
_26600
PS417_26605: PS417_26605 - malonate decarboxylase subunit beta, at 5,751,180 to 5,752,022
_26605
PS417_26610: PS417_26610 - malonate decarboxylase subunit delta, at 5,752,015 to 5,752,314
_26610
PS417_26615: PS417_26615 - triphosphoribosyl-dephospho-CoA synthase, at 5,752,314 to 5,753,147
_26615
Position (kb) 5751
5752
5753 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5750.613 kb on - strand, within PS417_26600 at 5750.924 kb on - strand, within PS417_26600 at 5751.071 kb on + strand, within PS417_26600 at 5751.072 kb on - strand, within PS417_26600 at 5751.072 kb on - strand, within PS417_26600 at 5751.094 kb on + strand, within PS417_26600 at 5751.095 kb on - strand, within PS417_26600 at 5751.199 kb on + strand at 5751.265 kb on + strand, within PS417_26605 at 5751.268 kb on + strand, within PS417_26605 at 5752.011 kb on + strand at 5752.255 kb on + strand, within PS417_26610 at 5752.255 kb on + strand at 5752.256 kb on - strand, within PS417_26610 at 5752.304 kb on - strand at 5752.419 kb on + strand, within PS417_26615 at 5752.419 kb on + strand, within PS417_26615 at 5752.420 kb on - strand, within PS417_26615 at 5752.420 kb on - strand at 5752.607 kb on + strand, within PS417_26615 at 5752.609 kb on + strand, within PS417_26615 at 5752.610 kb on - strand, within PS417_26615 at 5752.610 kb on - strand, within PS417_26615
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days remove 5,750,613 - PS417_26600 0.26 -1.0 5,750,924 - PS417_26600 0.66 -2.2 5,751,071 + PS417_26600 0.85 -0.3 5,751,072 - PS417_26600 0.85 +2.2 5,751,072 - PS417_26600 0.85 -0.3 5,751,094 + PS417_26600 0.88 +0.1 5,751,095 - PS417_26600 0.88 +0.1 5,751,199 + +0.0 5,751,265 + PS417_26605 0.10 -0.9 5,751,268 + PS417_26605 0.10 -0.4 5,752,011 + -0.9 5,752,255 + PS417_26610 0.80 +0.2 5,752,255 + +2.6 5,752,256 - PS417_26610 0.80 +0.4 5,752,304 - -0.3 5,752,419 + PS417_26615 0.13 +1.9 5,752,419 + PS417_26615 0.13 -0.1 5,752,420 - PS417_26615 0.13 +0.4 5,752,420 - -0.7 5,752,607 + PS417_26615 0.35 +0.7 5,752,609 + PS417_26615 0.35 +1.6 5,752,610 - PS417_26615 0.35 +1.0 5,752,610 - PS417_26615 0.35 +0.0
Or see this region's nucleotide sequence