Experiment: Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_26285 and PS417_26290 are separated by 14 nucleotides PS417_26290 and PS417_26295 are separated by 27 nucleotides
PS417_26285: PS417_26285 - 3-hydroxybutyryl-CoA dehydrogenase, at 5,680,448 to 5,681,413
_26285
PS417_26290: PS417_26290 - 4-hydroxybenzoyl-CoA thioesterase, at 5,681,428 to 5,681,904
_26290
PS417_26295: PS417_26295 - gamma-butyrobetaine dioxygenase, at 5,681,932 to 5,683,092
_26295
Position (kb) 5681
5682 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5680.962 kb on - strand, within PS417_26285 at 5681.156 kb on + strand, within PS417_26285 at 5681.156 kb on + strand, within PS417_26285 at 5681.157 kb on - strand, within PS417_26285 at 5681.157 kb on - strand, within PS417_26285 at 5681.234 kb on + strand, within PS417_26285 at 5681.235 kb on - strand, within PS417_26285 at 5681.235 kb on - strand, within PS417_26285 at 5681.446 kb on + strand at 5681.446 kb on + strand at 5681.446 kb on + strand at 5681.446 kb on + strand at 5681.480 kb on - strand, within PS417_26290 at 5681.621 kb on - strand, within PS417_26290 at 5681.621 kb on - strand, within PS417_26290 at 5681.621 kb on - strand, within PS417_26290 at 5681.662 kb on - strand, within PS417_26290 at 5681.915 kb on + strand at 5681.922 kb on - strand at 5681.965 kb on - strand at 5681.965 kb on - strand at 5681.996 kb on + strand at 5682.098 kb on + strand at 5682.098 kb on + strand, within PS417_26295 at 5682.098 kb on + strand, within PS417_26295 at 5682.100 kb on + strand, within PS417_26295 at 5682.101 kb on - strand, within PS417_26295 at 5682.101 kb on - strand, within PS417_26295
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days remove 5,680,962 - PS417_26285 0.53 +0.7 5,681,156 + PS417_26285 0.73 -0.7 5,681,156 + PS417_26285 0.73 -2.7 5,681,157 - PS417_26285 0.73 +2.3 5,681,157 - PS417_26285 0.73 -0.8 5,681,234 + PS417_26285 0.81 -0.7 5,681,235 - PS417_26285 0.81 +0.0 5,681,235 - PS417_26285 0.81 -0.4 5,681,446 + +0.1 5,681,446 + -1.0 5,681,446 + -0.2 5,681,446 + +0.6 5,681,480 - PS417_26290 0.11 -1.4 5,681,621 - PS417_26290 0.40 -1.2 5,681,621 - PS417_26290 0.40 -0.6 5,681,621 - PS417_26290 0.40 -1.8 5,681,662 - PS417_26290 0.49 -0.4 5,681,915 + -0.4 5,681,922 - +1.0 5,681,965 - +0.0 5,681,965 - -0.6 5,681,996 + -3.0 5,682,098 + +1.6 5,682,098 + PS417_26295 0.14 +0.4 5,682,098 + PS417_26295 0.14 -1.1 5,682,100 + PS417_26295 0.14 -0.5 5,682,101 - PS417_26295 0.15 +0.2 5,682,101 - PS417_26295 0.15 +0.6
Or see this region's nucleotide sequence